Department Systems Analysis, Integrated Assessment and Modelling

Modelling Aquatic Ecosystems

Course 701-0426-00, Bachelor's and Master's programme Environmental SciencesETH Zürich

Goals:

The students are able to:

  • build mathematical models of aquatic ecosystems that consider the most important physical, chemical, biogeochemical, biological, and ecological processes.
  • explain the interactions between these processes, especially between ecological and biogeochemical processes, and the behaviour of the system that results from these interacting processes.
  • formulate, implement and apply simple ecological models.
  • consider stochasticity and uncertainty.

Contents:

  • Basic concepts:
    Principles of modelling environmental systems, formulation of mass balance equations, formulation of transformation processes
  • Formulation of ecosystems processes:
    Physical processes (transport and mixing, sedimentation, gas exchange, detachment and resuspension), chemical processes (chemical equilibria, sorption), biological processes (primary production, respiration, death, consumption, mineralization, nitrification, hydrolysis, bacterial growth, colonization)
  • Consideration of Stochasticity and Uncertainty Sources, description, and propagation of stochasticity and uncertainty
  • Didactic models of aquatic ecosystems:
    Lake phytoplankton model, lake phyto- and zooplankton model, two box oxygen and phosphorus lake model, model of biogeochemical cycles in a lake, oxygen and nutrient household model of a river, benthic population model of a river.
  • Research models of aquatic ecosystems for lakes and rivers
  • Exercises: implementing and practicing the application of the didactic models using libraries of the program package for statistical computing and graphics R (http://www.r-project.org).

Downloads 2026

Programm 2026

Manuscript

R reference card

R-Tutorial

18.02.2026: Slides_L1.pdf,  plots_rate_factors.r

25.02.2026: Exercise 1: [exercise1.pdf, exercise1.htmlexercise1_slides.pdf];

                    Solution: [Solution_ex1.pdf, solution_ex1.html].

04.03.2026: Exercise 2:[exercise2.pdf, exercise2.html, exercise2_slides.pdf];

                      Solution: [solution_ex2.pdf, solution_ex2.html]

11.03.2026: Slides_L2.pdf

16.03.2026: Slides_L3.pdf, Exercise 3: [exercise3.pdf, exercise3.html];
                     Solution: [solution_ex3.pdf, solution_ex3.html]