Publications 2010

peer reviewed journals

• Araki H, Schmid C (2010) Is hatchery stocking a help or harm? Evidence, limitations and future directions in ecological and genetic surveys. Aquaculture [pdf, 340 KB]
  
  
• Blouin MS, Thuillier, V., Cooper, B., Amarasinghe, V., Cluzel, L. Araki, H., Grunau, C. (2010) No evidence for large differences in genomic methylation between wild and hatchery steelhead trout (Oncorhynchus mykiss). Can J FIsh Aquat Sci
  
  

• Gu T, Tan S, GouX, Araki H, Tian D (2010) Avoidance of long mononucleotide repeats in codon pair usage. Genetics 188, 1077-1084 doi:10.1534/genetics.110.121137
  
  

• Wang WK, Ho CW, Hung KH, Wang KH, Huang CC, Araki H, Hwang TW, Osada N, Chiang TY (2010) Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture. New Phytol doi: 10.1111/j.1469-8137.2010.03383.x [pdf, 406 KB]
  
  

• Yue JX, Li J, Wang D, Araki H, Tian D, Yang S. (2010) Genome-wide investigation reveals high evolutionary rates in annual plants. BMC Plant Biol 10:242 [pdf, 1.4 MB]
  
  
• Bittner, D, Excoffier, L, Largiader, L (2010) Patterns of morphological changes and hybridization between sympatric whitefish morphs (Coregonus spp.) in a Swiss lake: a role for eutrophication? Mol Ecol 19, 2152-2167 doi: 10.1111/j.1365-294X.2010.04623.x [pdf, 0.6 MB]
  
  

• Young KA, Genner  MJ, Haesler MP,  Joyce DA (2010). Sequential female assessment drives complex sexual selection on bower shape in a cichlid fish. Evolution 64-8 2246-2253  doi:10.1111/j.1558-5646.2010.00984.x [pdf, 208 KB]
  
  
• Hudson, AG, Vonlanthen, P, Seehausen, O. Rapid parallel adaptive radiations from a single hybridogenic ancestral population. Proc Royal Society of London, Series B. doi:10.1098/rspb.2010.0925 [pdf, 1.0 MB]
  
  
• Keller I, Taverna A, Seehausen O (2010) A pyrosequencing assay for the rapid discrimination of mitochondrial lineages in the Salmo trutta species complex, Mol Ecol Resour doi: 10.1111/j.1755-0998.2010.02897.x [pdf, 206 KB]
  
  

• Westram, AM, Jokela J, Keller, I (2010) Isolation and characterization of ten polymorphic microsatellite markers for three cryptic Gammarus fossarum (Amphipoda) species Conserv Genet Resour doi:10.1007/s12686-010-9287-1 [pdf, 162 KB]
  
  

• Lucek, K, Roy, D, Bezault, E, Sivasundar, A, Seehausen, O. (2010) Hybridization between distant lineages increases adaptive variation during a biological invasion: stickleback in Switzerland. MolEcol 19, 3995-4011 doi: 10.1111/j.1365-294X.2010.04781.x [pdf, 1.3 MB]
  
  
• Brown J.L., Maan M.E., Cummings M.E., Summers K. (2010) Evidence for selection on coloration in a Panamanian poison frog: a coalescent-based approach. J. Biogeogr 37:891-901 [pdf, 1,2 MB]
  
  
• Maan M.E., Seehausen O. (2010). Mechanisms of species divergence through visual adaptation and sexual selection – perspectives from a cichlid model system. Curr Zool 56 (3): 285299 [pdf, 277 KB]
  
  
• Maan M.E., Seehausen O, Van Alphen JJM. (2010) Female mating preferences and male coloration covary with water transparency in a Lake Victoria cichlid fish.  Biol J Linn Soc 99: 398-406 [pdf, 355 KB]
  
  
• Magalhaes IS, Mwaiko S, Seehausen O (2010) Sympatric colour polymorphisms associated with non-random gene flow in cichlid fish of Lake Victoria. Mol Ecol doi: 10.1111/j.1365-294X.2010.04751.x [pdf, 0.6 MB]
  
  
• Magalhaes, IS, Seehausen, O. [2010). Genetics of male nuptial colour divergence between sympatric sister species of a Lake Victoria cichlid fish.  J Evolution Biol. 23, 914–924 doi:10.1111/j.1420-9101.2010.01960.x [pdf, 325 KB]
  
  
• Melián, C. J., Alonso, D., Vázquez, D. P., Regetz, J., and Allesina, S. (2010).
  Frequency-Dependent Selection Predicts Patterns of Radiations and Biodiversity. PLoS Comput Bio doi:10.1371/journal.pcbi.1000892 [pdf, 0.9 MB]
  
  
• Melián, C. J. (2010) Community Ecology: Stasis, Evolution or Revolution? (Book Review). Trends Ecol Evol, 25: 684-685.
  
  
• Olesen, J. M., Dupont, Y. L., O'Gorman, E., Ings, T. C., Layer, K., Melián, C. J., Troejelsgaard, K., Pichler, D. E., Rasmussen, C., and Woodward, G. (2010) From Broadstone to Zackenberg: Space, Time, and Hierarchies in Ecological Networks. Adv Ecol Res, 42:1–69.
  
  
• Dijkstra PD, Lindström J, Metcalfe NB, Hemelrijk CK , Brendel M, Seehausen O, Groothuis TGG (2010) Frequency-dependent social dominance in a color polymorphic cichlid fish.  Evolution. doi:10.1111/j.1558-5646.2010.01046.x [pdf, 268 KB]
  
  

• Harmon LJ, Losos JB, Davies TJ, Gillespie RG, Gittleman JL, Jennings WB, Kozak KH, McPeek MA, Moreno-Roark F, Near TJ, Purvis A, Ricklefs RE, Schluter D, Schulte JA, Seehausen O, Sidlauskas BL, Torres-Carvajal O, Weir JT, Mooers AO. (2010) Early bursts of body size and shape evolution are rare in comparative data. Evolution doi:10.1111/j.1558-5646.2010.01025.x [pdf, 252 KB]
  
  

• Mzighani SI, Nikaido M, Takeda M, Seehausen O, Budeba YL, Ngatunga BP, Katunzi EFB, Aibara M, Mizoiri S, Sato T, Tachida H, Okada N (2010) Genetic variation and demographic history of the Haplochromis laparogramma Group 2 of Lake Victoria — An analysis based on SINEs and mitochondrial DNA. Gene doi:10.1016/j.gene.2009.10.002 [pdf, 0.7 MB]
  
  

• Van der Sluijs I, Seehausen O, Van Dooren TJM, Van Alphen JJM. (2010) No evidence for a genetic association between female mating preference and male secondary sexual trait in a Lake Victoria cichlid fish. Curr Zool 56 (1): 57−64, 2010 [pdf, 178 KB]
  
  
• Sivasundar A, Palumbi SR, (2010) Life history, ecology and the biogeography of strong genetic breaks among fifteen species of Pacific rockfish, Sebastes. Mar Biol  DOI 10.1007/s00227-010-1419-3 [pdf, 0,8 MB]
  
  

• Sivasundar A, Palumbi SR, (2010) Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth. J Evolution Biol 23, 1159–1169 doi:10.1111/j.1420-9101.2010.01977.x [pdf, 0,5 MB]
  
  

• Kelly RP, Oliver TA, Sivasundar A, Palumbi SR (2010) A method for detecting population genetic structure in diverse, high gene-flow species. J Hered 101:423-436 [pdf, 0.5 MB]