Abteilung Systemanalyse, Integrated Assessment und Modellierung

Überbrückung der Kluft zwischen Data Science und mechanistischer Modellierung für ein besseres Verständnis der Zusammensetzung von Lebensgemeinschaften

Hintergrund

Die Zusammensetzung von Lebensgemeinschaften in Ökosystemen hängt von verschiedenen Faktoren ab: Davon welche Arten in der Region vorhanden sind, von lokalen Umweltbedingungen und dem Zusammenspiel zwischen den Arten. Zur Vorhersage der Vorkommenswahrscheinlichkeit verschiedener Arten können unterschiedliche Methoden verwendet werden. Diese basieren entweder auf der mathematischen Formulierung bereits existierenden Wissens über die Mechanismen, die das Artvorkommen beeinflussen. Oder sie basieren auf einer statistischen Datenanalyse. Dazu kommen Methoden des Maschinellen Lernens, bei denen es schwieriger ist, Zusammenhänge mit den Umweltfaktoren zu verstehen. Alle drei Methoden haben Vor- und Nachteile, wurden bisher aber selten gemeinsam angewendet, da sie sich in ihren Ansprüchen an die Daten und im Rechenaufwand unterscheiden.

Inhalt und Ziel des Forschungsprojekts

In diesem Projekt werden mechanistische Modelle, statistische Modelle und Methoden des Maschinellen Lernens angewendet, um das Wissen über Umwelteinflüsse auf wirbellose Kleinlebewesen in Fliessgewässern zu verbessern, damit wir in Zukunft besser vorhersagen können, welche Arten unter welchen Umweltbedingungen vorkommen. Wir werden die gewonnenen Erkenntnisse verwenden, um ein möglichst einfaches und effizientes Modell zu entwickeln, dass die wichtigsten Mechanismen enthält und optimiert ist für die Vorhersage. Ein weiteres Ziel ist es, anhand der Computer Simulationen Kenngrössen über die Zusammensetzung von Artengemeinschaften zu identifizieren, die möglichst sensitiv auf zukünftige Änderungen der Umweltbedingungen reagieren.

Wissenschaftlicher und gesellschaftlicher Kontext des Forschungsprojekts

Unsere Arbeit wird neue Erkenntnisse zur Vorhersage der Zusammensetzung der Lebensgemeinschaften generieren, die das Management aquatischer Ökosysteme im Hinblick auf zukünftige Veränderungen der Umweltbedingungen unterstützen kann.

Publikationen

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   0 => Snowflake\Publications\Domain\Model\Publicationprototypepersistent entity (uid=32476, pid=124)
      originalId => protected32476 (integer)
      authors => protected'Khaliq, I.; Chollet Ramampiandra, E.; Vorburger, C.; Narwani,
          A.; Schuwirth, N.
' (104 chars) title => protected'The effect of water temperature changes on biological water quality assessme
         nt
' (78 chars) journal => protected'Ecological Indicators' (21 chars) year => protected2024 (integer) volume => protected159 (integer) issue => protected'' (0 chars) startpage => protected'111652 (10 pp.)' (15 chars) otherpage => protected'' (0 chars) categories => protected'biological indices; macroinvertebrate species richness; IBCH index; SPEARpes
         cticides index; climate change; water quality assessment
' (132 chars) description => protected'Increasing temperatures caused by anthropogenic climate change are leading t
         o changes in the composition of local communities across biomes. This has im
         plications for ecological assessment methods that rely on macroinvertebrates
          as bioindicators of water quality. To investigate the influence of changing
          water temperature on these assessment methods, we analysed macroinvertebrat
         e data from Swiss national monitoring programs. We used a species distributi
         on model to simulate temperature change effects on macroinvertebrate communi
         ties and estimated the resulting changes on three biological indices commonl
         y used in Switzerland, namely the species richness of Ephemeroptera, Plecopt
         era and Trichoptera (EPT), the Swiss biological (IBCH) index along with its
         components, as well as the species at risk pesticides (SPEAR<sub>pesticides<
         /sub>) index. While results vary by temperature scenario and index, our mode
         l results for the most realistic water temperature increase scenario of + 
         2 °C across most sites in Switzerland suggest no, or only a minor, influen
         ce of temperature (not accounting for other hydrological changes). Our model
          projection predicted only a small increase in the probability of occurrence
          for 70 % of the studied families. The sensitivity to temperature as captur
         ed in our model is generally not very high and varies among the biological i
         ndices: on average across all sites, a + 2 °C increase in temperature re
         sulted in a 7 % increase in EPT species richness, a 4 % increase in the IB
         CH index, and a less than 1 % increase in the SPEAR<sub>pesticides</sub> in
         dex. Our study suggests the robustness of these biological indices to modera
         te warming and points towards the usefulness of these biological indices for
          the next few decades as tools for water quality assessment. Despite some li
         mitations of statistical species distribution models (e.g., not accounting f
         or dispersal limitation or biotic interactions, predictive performance varyi
         ng by taxon), the study ...
' (2280 chars) serialnumber => protected'1470-160X' (9 chars) doi => protected'10.1016/j.ecolind.2024.111652' (29 chars) uid => protected32476 (integer) _localizedUid => protected32476 (integer)modified _languageUid => protectedNULL _versionedUid => protected32476 (integer)modified pid => protected124 (integer)
1 => Snowflake\Publications\Domain\Model\Publicationprototypepersistent entity (uid=30648, pid=124) originalId => protected30648 (integer) authors => protected'Chollet Ramampiandra,&nbsp;E.; Scheidegger,&nbsp;A.; Wydler,&nbsp;J.; Schuwi
         rth,&nbsp;N.
' (88 chars) title => protected'A comparison of machine learning and statistical species distribution models
         : Quantifying overfitting supports model interpretation
' (131 chars) journal => protected'Ecological Modelling' (20 chars) year => protected2023 (integer) volume => protected481 (integer) issue => protected'' (0 chars) startpage => protected'110353 (11 pp.)' (15 chars) otherpage => protected'' (0 chars) categories => protected'species distribution model; statistical models; interpretable machine learni
         ng; model complexity; freshwater macroinvertebrates
' (127 chars) description => protected'Species distribution models are commonly applied to predict species response
         s to environmental conditions. A wide variety of models with different prope
         rties exist that vary in complexity, which affects their predictive performa
         nce and interpretability. Machine learning algorithms are increasingly used
         because they are capable to capture complex relationships and are often bett
         er in prediction. However, to inform environmental management, it is importa
         nt that a model predicts well for the right reasons. It remains a challenge
         to select a model with a reasonable level of complexity that captures the tr
         ue relationship between the response and explanatory variables as good as po
         ssible rather than fitting to the noise in the data.<br />In this study we a
         sk: 1) how much predictive performance can we gain by using increasingly com
         plex models, 2) how does model complexity affect the degree of overfitting,
         and 3) do the inferred responses differ among models and what can we learn f
         rom them? To address these questions, we applied eight models with different
          complexity to predict the probability of occurrence of freshwater macroinve
         rtebrate taxa based on 2729 Swiss monitoring samples. We compared the models
          in terms of predictive performance during cross-validation and for generali
         zation out of the calibration domain ("extrapolation" or transferability). W
         e applied model agnostic tools to shed light on model interpretability.<br /
         >Contrary to our expectation, all models predicted similarly well during cro
         ss-validation, while no model predicted better than the null model during ou
         t-of-domain generalization on average over all taxa. Performance was best fo
         r taxa with intermediate prevalence. More complex models predicted slightly
         better than standard statistical models but were prone to overfitting.<br />
         Overfitting indicates that a model describes not only the signal in the data
          but also part of the noise. This impedes the interpretation of response sha
         pes learned by the model...
' (2835 chars) serialnumber => protected'0304-3800' (9 chars) doi => protected'10.1016/j.ecolmodel.2023.110353' (31 chars) uid => protected30648 (integer) _localizedUid => protected30648 (integer)modified _languageUid => protectedNULL _versionedUid => protected30648 (integer)modified pid => protected124 (integer)
Khaliq, I.; Chollet Ramampiandra, E.; Vorburger, C.; Narwani, A.; Schuwirth, N. (2024) The effect of water temperature changes on biological water quality assessment, Ecological Indicators, 159, 111652 (10 pp.), doi:10.1016/j.ecolind.2024.111652, Institutional Repository
Chollet Ramampiandra, E.; Scheidegger, A.; Wydler, J.; Schuwirth, N. (2023) A comparison of machine learning and statistical species distribution models: Quantifying overfitting supports model interpretation, Ecological Modelling, 481, 110353 (11 pp.), doi:10.1016/j.ecolmodel.2023.110353, Institutional Repository

Team

Dr. Nele Schuwirth Abteilungsleiterin und Gruppenleiterin Tel. +41 58 765 5528 Inviare e-mail
Andreas Scheidegger Statistics, Data Science & Modeling Tel. +41 58 765 5053 Inviare e-mail

Kontakt

Dr. Nele Schuwirth Abteilungsleiterin und Gruppenleiterin Tel. +41 58 765 5528 Inviare e-mail