Abteilung Aquatische Ökologie



Adde, A., Rey, P. L., Brun, P., Külling, N., Fopp, F., Altermatt, F., … Guisan, A. (2023). N-SDM: a high-performance computing pipeline for Nested Species Distribution Modelling. Ecography. doi:10.1111/ecog.06540, Institutional Repository
Altermatt, F., Carraro, L., Antonetti, M., Albouy, C., Zhang, Y., Lyet, A., … Pellissier, L. (2023). Quantifying biodiversity using eDNA from water bodies: general principles and recommendations for sampling designs. Environmental DNA. doi:10.1002/edn3.430, Institutional Repository
Alther, R., Krähenbühl, A., Bucher, P., & Altermatt, F. (2023). Optimizing laboratory cultures of Gammarus fossarum (Crustacea: Amphipoda) as a study organism in environmental sciences and ecotoxicology. Science of the Total Environment, 855, 158730 (9 pp.). doi:10.1016/j.scitotenv.2022.158730, Institutional Repository
Blackman, R. C., Walser, J. ‐C., Rüber, L., Brantschen, J., Villalba, S., Brodersen, J., … Altermatt, F. (2023). General principles for assignments of communities from eDNA: open versus closed taxonomic databases. Environmental DNA, 5(2), 326-342. doi:10.1002/edn3.382, Institutional Repository
Bosco, L., Moser, V., Jones, M. M., Opedal, Ø., Ovaskainen, O., Sonja, G., … Jacot, A. (2023). Habitat area and local habitat conditions outweigh fragmentation effects on insect communities in vineyards. Ecological Solutions and Evidence, 4(1), e12193 (12 pp.). doi:10.1002/2688-8319.12193, Institutional Repository
Brasseur, M. V., Martini, J., Wilfling, O., Wüthrich, R., Birnstiel, E., Oester, R., … Vitecek, S. (2023). Exploring macroinvertebrate biodiversity in the dynamic southern Balkan stream network of the Vjosa using preservative-based DNA metabarcoding. Aquatic Sciences, 85(2), 51 (15 pp.). doi:10.1007/s00027-023-00948-w, Institutional Repository
Burdon, F. J., Reyes, M., Schönenberger, U., Räsänen, K., Tiegs, S. D., Eggen, R. I. L., & Stamm, C. (2023). Environmental context determines pollution impacts on ecosystem functioning. Oikos, 2023(2), e09131 (14 pp.). doi:10.1111/oik.09131, Institutional Repository
Carraro, L., Blackman, R. C., & Altermatt, F. (2023). Modelling environmental DNA transport in rivers reveals highly resolved spatio-temporal biodiversity patterns. Scientific Reports, 13(1), 8854 (14 pp.). doi:10.1038/s41598-023-35614-6, Institutional Repository
Carvajal-Quintero, J., Comte, L., Giam, X., Olden, J. D., Brose, U., Erős, T., … Tedesco, P. A. (2023). Scale of population synchrony confirms macroecological estimates of minimum viable range size. Ecology Letters, 26(2), 291-301. doi:10.1111/ele.14152, Institutional Repository
Cereghetti, E., & Altermatt, F. (2023). Spatiotemporal dynamics in freshwater amphipod assemblages are associated with surrounding terrestrial land use type. Ecosphere, 14(3), e4469 (12 pp.). doi:10.1002/ecs2.4469, Institutional Repository
Chanut, P. C. M., Burdon, F. J., Datry, T., & Robinson, C. T. (2023). Convergence in floodplain pond communities indicates different pathways to community assembly. Aquatic Sciences, 85(2), 59 (16 pp.). doi:10.1007/s00027-023-00957-9, Institutional Repository
Chanut, P. C. M., Drost, A., Siebers, A. R., Paillex, A., & Robinson, C. T. (2023). Flow intermittency affects structural and functional properties of macroinvertebrate communities in alpine streams. Freshwater Biology, 68(2), 212-228. doi:10.1111/fwb.14018, Institutional Repository
Couton, M., Hürlemann, S., Studer, A., Alther, R., & Altermatt, F. (2023). Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land-use and geology. Molecular Ecology. doi:10.1111/mec.16955, Institutional Repository
Dougherty, L. R., Rovenolt, F., Luyet, A., Jokela, J., & Stephenson, J. F. (2023). Ornaments indicate parasite load only if they are dynamic or parasites are contagious. Evolution Letters. doi:10.1093/evlett/qrad017, Institutional Repository
Gimmi, E., Wallisch, J., & Vorburger, C. (2023). Defensive symbiosis in the wild: seasonal dynamics of parasitism risk and symbiont‐conferred resistance. Molecular Ecology. doi:10.1111/mec.16976, Institutional Repository
Grigoropoulou, A., Hamid, S. A., Acosta, R., Akindele, E. O., Al‐Shami, S. A., Altermatt, F., … Domisch, S. (2023). The global EPTO database: worldwide occurrences of aquatic insects. Global Ecology and Biogeography, 32(5), 642-655. doi:10.1111/geb.13648, Institutional Repository
Ho, H. C., Pellissier, L., & Altermatt, F. (2023). Die Klimaerwärmung bedroht die biologische Vielfalt und intensive landwirtschaftliche Nutzung kann dies zusätzlich verschärfen. Le réchauffement climatique menace la biodiversité et l'agriculture intensive risque d'aggraver la situation. Nature et Paysage. Natur und Landschaft: Inside (1), 20-23. , Institutional Repository
Isles, P. D. F., Creed, I. F., Hessen, D. O., Kortelainen, P., Paterson, M., Pomati, F., … Bergström, A. K. (2023). Widespread synchrony in phosphorus concentrations in northern lakes linked to winter temperature and summer precipitation. Limnology and Oceanography Letters. doi:10.1002/lol2.10318, Institutional Repository
Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511-518. doi:10.1111/1755-0998.13723, Institutional Repository
Koubová, A., Lorenc, F., Horváthová, T., Chroňáková, A., & Šustr, V. (2023). Millipede gut-derived microbes as a potential source of cellulolytic enzymes. World Journal of Microbiology and Biotechnology, 39(7), 169 (17 pp.). doi:10.1007/s11274-023-03620-5, Institutional Repository
Kowarik, C., Martin-Creuzburg, D., Mathers, K. L., Weber, C., & Robinson, C. T. (2023). Stream degradation affects aquatic resource subsidies to riparian ground-dwelling spiders. Science of the Total Environment, 855, 158658 (13 pp.). doi:10.1016/j.scitotenv.2022.158658, Institutional Repository
Lafuente, E., Carles, L., Walser, J. C., Giulio, M., Wullschleger, S., Stamm, C., & Räsänen, K. (2023). Effects of anthropogenic stress on hosts and their microbiomes: treated wastewater alters performance and gut microbiome of a key detritivore (Asellus aquaticus). Evolutionary Applications, 16(4), 824-848. doi:10.1111/eva.13540, Institutional Repository
Langeloh, L., Jokela, J., Seppälä, K., & Seppälä, O. (2023). Ecological determinants of variation in phenotypic selection on quantitative immune defence traits. Oikos, 2023(2), e09506 (11 pp.). doi:10.1111/oik.09506, Institutional Repository
Li, F., Zhang, Y., Altermatt, F., Yang, J., & Zhang, X. (2023). Destabilizing effects of environmental stressors on aquatic communities and interaction networks across a major river basin. Environmental Science and Technology, 57(20), 7828-7839. doi:10.1021/acs.est.3c00456, Institutional Repository
Liao, A., Hartikainen, H., & Buser, C. C. (2023). Individual level microbial communities in the digestive system of the freshwater isopod Asellus aquaticus: complex, robust and prospective. Environmental Microbiology Reports, 15(3), 188-196. doi:10.1111/1758-2229.13142, Institutional Repository
Llopis-Belenguer, C., Balbuena, J. A., Blasco-Costa, I., Karvonen, A., Sarabeev, V., & Jokela, J. (2023). Sensitivity of bipartite network analyses to incomplete sampling and taxonomic uncertainty. Ecology, 104(4), e3974 (14 pp.). doi:10.1002/ecy.3974, Institutional Repository
Lustenhouwer, N., Moerman, F., Altermatt, F., Bassar, R. D., Bocedi, G., Bonte, D., … Berger, D. (2023). Experimental evolution of dispersal: unifying theory, experiments and natural systems. Journal of Animal Ecology. doi:10.1111/1365-2656.13930, Institutional Repository
Martini, J., Walther, F., Schenekar, T., Birnstiel, E., Wüthrich, R., Oester, R., … Vitecek, S. (2023). The last hideout: abundance patterns of the not-quite-yet extinct mayfly Prosopistoma pennigerum in the Albanian Vjosa River network. Insect Conservation and Diversity, 16(2), 285-297. doi:10.1111/icad.12620, Institutional Repository
McFadden, I. R., Sendek, A., Brosse, M., Bach, P. M., Baity‐Jesi, M., Bolliger, J., … Narwani, A. (2023). Linking human impacts to community processes in terrestrial and freshwater ecosystems. Ecology Letters, 26(2), 203-218. doi:10.1111/ele.14153, Institutional Repository
Merz, E., Kitahara, M. V., & Flores, A. A. V. (2023). A legacy of invasive sun corals: distinct mobile invertebrate assemblages at near-reef coral-dominated rubble. Marine Environmental Research, 188, 105974 (8 pp.). doi:10.1016/j.marenvres.2023.105974, Institutional Repository
Merz, E., Saberski, E., Gilarranz, L. J., Isles, P. D. F., Sugihara, G., Berger, C., & Pomati, F. (2023). Disruption of ecological networks in lakes by climate change and nutrient fluctuations. Nature Climate Change, 13, 389-396. doi:10.1038/s41558-023-01615-6, Institutional Repository
Moosmann, M., Hudson, C. M., Seehausen, O., & Matthews, B. (2023). The phenotypic determinants of diet variation between divergent lineages of threespine stickleback. Evolution, International Journal of Organic Evolution, 77(1), 13-25. doi:10.1093/evolut/qpac021, Institutional Repository
Overcast, I., Achaz, G., Aguilée, R., Andújar, C., Arribas, P., Creedy, T. J., … Morlon, H. (2023). Towards a genetic theory of island biogeography: inferring processes from multidimensional community-scale data. Global Ecology and Biogeography, 32(1), 4-23. doi:10.1111/geb.13604, Institutional Repository
Peller, T., Guichard, F., & Altermatt, F. (2023). The significance of partial migration for food web and ecosystem dynamics. Ecology Letters, 26(1), 3-22. doi:10.1111/ele.14143, Institutional Repository
Phillips, J. S., Einarsson, Á., Strickland, K., Ives, A. R., Kristjánsson, B. K., & Räsänen, K. (2023). Demographic basis of spatially structured fluctuations in a threespine stickleback metapopulation. American Naturalist, 201(3), E41-E55. doi:10.1086/722741, Institutional Repository
Rajarajan, A. (2023). Integrating host-microbiota dynamics with disease ecology in the model Daphnia (Doctoral dissertation). doi:10.3929/ethz-b-000608900, Institutional Repository
Rayfield, B., Baines, C. B., Gilarranz, L. J., & Gonzalez, A. (2023). Spread of networked populations is determined by the interplay between dispersal behavior and habitat configuration. Proceedings of the National Academy of Sciences of the United States of America PNAS, 120(11), e2201553120 (8 pp.). doi:10.1073/pnas.2201553120, Institutional Repository
Robinson, C. T., Consoli, G., & Ortlepp, J. (2023). Importance of artificial high flows in maintaining the ecological integrity of a regulated river. Science of the Total Environment, 882, 163569 (12 pp.). doi:10.1016/j.scitotenv.2023.163569, Institutional Repository
Ruthsatz, K., Eterovick, P. C., Bartels, F., & Mausbach, J. (2023). Contributions of water-borne corticosterone as one non-invasive biomarker in assessing nitrate pollution stress in tadpoles of Rana temporaria. General and Comparative Endocrinology, 331, 114164 (10 pp.). doi:10.1016/j.ygcen.2022.114164, Institutional Repository
Sieber, N., King, A., Krieg, R., Zenker, A., Vorburger, C., & Hartikainen, H. (2023). Large‐scale eDNA monitoring of multiple aquatic pathogens as a tool to provide risk maps for wildlife diseases. Environmental DNA. doi:10.1002/edn3.427, Institutional Repository
Soto, I., Cuthbert, R. N., Ricciardi, A., Ahmed, D. A., Altermatt, F., Schäfer, R. B., … Briski, E. (2023). The faunal Ponto-Caspianization of central and western European waterways. Biological Invasions. doi:10.1007/s10530-023-03060-0, Institutional Repository
Soto, I., Cuthbert, R. N., Ahmed, D. A., Kouba, A., Domisch, S., Marquez, J. R. G., … Haubrock, P. J. (2023). Tracking a killer shrimp: Dikerogammarus villosus invasion dynamics across Europe. Diversity and Distributions, 29(1), 157-172. doi:10.1111/ddi.13649, Institutional Repository
Strickland, K., Räsänen, K., Kristjánsson, B. K., Phillips, J. S., Einarsson, A., Snorradóttir, R. G., … Jónsson, Z. O. (2023). Genome-phenotype-environment associations identify signatures of selection in a panmictic population of threespine stickleback. Molecular Ecology, 32(7), 1708-1725. doi:10.1111/mec.16845, Institutional Repository
Thomas, P. K., Hietala, D. C., & Cardinale, B. J. (2023). Tolerance to allelopathic inhibition by free fatty acids in five biofuel candidate microalgae strains. Bioresource Technology Reports, 21, 101321 (9 pp.). doi:10.1016/j.biteb.2022.101321, Institutional Repository
Vasantha Raman, N., Dubey, A., Millar, E., Nava, V., Leoni, B., & Gallego, I. (2023). Monitoring contaminants of emerging concern in aquatic systems through the lens of citizen science. Science of the Total Environment, 874, 162527 (14 pp.). doi:10.1016/j.scitotenv.2023.162527, Institutional Repository
Weitzman, C. L., Kaestli, M., Rose, A., Hudson, C. M., Gibb, K., Brown, G. P., … Christian, K. (2023). Geographic variation in bacterial assemblages on cane toad skin is influenced more by local environments than by evolved changes in host traits. Biology Open, 12(2), bio059641 (8 pp.). doi:10.1242/bio.059641, Institutional Repository
Wilkes, M. A., Carrivick, J. L., Castella, E., Ilg, C., Cauvy-Fraunié, S., Fell, S. C., … Brown, L. E. (2023). Glacier retreat reorganizes river habitats leaving refugia for Alpine invertebrate biodiversity poorly protected. Nature Ecology & Evolution. doi:10.1038/s41559-023-02061-5, Institutional Repository
Zhang, H., Mächler, E., Morsdorf, F., Niklaus, P. A., Schaepman, M. E., & Altermatt, F. (2023). A spatial fingerprint of land-water linkage of biodiversity uncovered by remote sensing and environmental DNA. Science of the Total Environment, 867, 161365 (12 pp.). doi:10.1016/j.scitotenv.2022.161365, Institutional Repository


Ahmed, S., Soorae, P. S., Hammadi, E. A., Zaabi, R. A., Saji, A., Khan, S. B., … Dhaheri, S. A. (2022). Does habitat heterogeneity influence taxonomic richness and abundance? A case study from a terrestrial protected area in Abu Dhabi, United Arab Emirates. Saudi Journal of Biological Sciences, 29, 1737-1746. doi:10.1016/j.sjbs.2021.10.056, Institutional Repository
Alther, R. (2022). Amphipodes. In Connaissance de l’environnement: Vol. UW-2220-F. Espèces exotiques en Suisse. Aperçu des espèces exotiques et de leurs conséquences. État 2022 (pp. 29-30). Bern: Office fédéral de l’environnement OFEV. , Institutional Repository
Alther, R. (2022). Amphipods. In Environmental studies: Vol. UW-2220-E. Alien species in Switzerland. An inventory of alien species and their impact. Situation as of 2022 (pp. 29-30). Bern: Federal Office for the Environement FOEN. , Institutional Repository
Alther, R. (2022). Flohkrebse. In Umwelt-Wissen: Vol. UW-2220-D. Gebietsfremde Arten in der Schweiz. Übersicht über die gebietsfremden Arten und ihre Auswirkungen. Stand 2022 (pp. 29-30). Bern: Bundesamt für Umwelt (BAFU). , Institutional Repository
Beck, S. V., Räsänen, K., Kristjánsson, B. K., Skúlason, S., Jónsson, Z. O., Tsinganis, M., & Leblanc, C. A. (2022). Variation in egg size and offspring phenotype among and within seven Arctic charr morphs. Ecology and Evolution, 12(10), e9427 (16 pp.). doi:10.1002/ece3.9427, Institutional Repository
Blackman, R. C., Brantschen, J., Walser, J. C., Wüthrich, R., & Altermatt, F. (2022). Monitoring invasive alien macroinvertebrate species with environmental DNA. River Research and Applications, 38(8), 1400-1412. doi:10.1002/rra.3947, Institutional Repository
Blackman, R. C., Ho, H. C., Walser, J. C., & Altermatt, F. (2022). Spatio-temporal patterns of multi-trophic biodiversity and food-web characteristics uncovered across a river catchment using environmental DNA. Communications Biology, 5, 259 (11 pp.). doi:10.1038/s42003-022-03216-z, Institutional Repository
Borko, Š., Altermatt, F., Zagmajster, M., & Fišer, C. (2022). A hotspot of groundwater amphipod diversity on a crossroad of evolutionary radiations. Diversity and Distributions, 28(12), 2765-2777. doi:10.1111/ddi.13500, Institutional Repository
Borrero-Santiago, A. R., Dellisanti, W., Sánchez-Quinto, A., Moreno-Andrés, J., Nemoy, P., Richa, K., … Mestre, M. (2022). Using Margalef's vision to understand the current aquatic microbial ecology. Scientia Marina, 86(1), e026 (9 pp.). doi:10.3989/scimar.05199.026, Institutional Repository
Brantschen, J., Pellissier, L., Walser, J. C., & Altermatt, F. (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6), 1356-1368. doi:10.1002/edn3.342, Institutional Repository
Brosse, M., Benateau, S., Gaudard, A., Stamm, C., & Altermatt, F. (2022). The importance of indirect effects of climate change adaptations on alpine and pre‐alpine freshwater systems. Ecological Solutions and Evidence, 3(1), e12127 (8 pp.). doi:10.1002/2688-8319.12127, Institutional Repository
Bruijning, M., Fossen, E. I. F., Jongejans, E., Vanvelk, H., Raeymaekers, J. A. M., Govaert, L., … De Meester, L. (2022). Host–parasite dynamics shaped by temperature and genotype: quantifying the role of underlying vital rates. Functional Ecology, 36, 485-499. doi:10.1111/1365-2435.13966, Institutional Repository
Bryner, A., & Spaak, P. (2022). Hauslabor für die Eawag-Wasserforschung. In F. Gartmann & F. Auderset (Eds.), Neujahrsblatt der Naturforschenden Gesellschaft in Zürich NGZH: Vol. 224. Der Greifensee. Symbiose von Naherholung und Naturschutz? (pp. 44-56). Fällanden: Verband zum Schutz des Greifensees. , Institutional Repository
Carraro, L., & Altermatt, F. (2022). Optimal Channel Networks accurately model ecologically-relevant geomorphological features of branching river networks. Communications Earth & Environment, 3, 125 (10 pp.). doi:10.1038/s43247-022-00454-1, Institutional Repository
Consoli, G., Haller, R. M., Döring, M., Hashemi, S., & Robinson, C. T. (2022). Tributary effects on the ecological responses of a regulated river to experimental floods. Journal of Environmental Management, 303, 114122 (16 pp.). doi:10.1016/j.jenvman.2021.114122, Institutional Repository
Costello, D. M., Tiegs, S. D., Boyero, L., Canhoto, C., Capps, K. A., Danger, M., … Zwart, J. A. (2022). Global patterns and controls of nutrient immobilization on decomposing cellulose in riverine ecosystems. Global Biogeochemical Cycles, 36(3), e2021GB007163 (15 pp.). doi:10.1029/2021GB007163, Institutional Repository
Cote, J., Dahirel, M., Schtickzelle, N., Altermatt, F., Ansart, A., Blanchet, S., … Legrand, D. (2022). Dispersal syndromes in challenging environments: a cross-species experiment. Ecology Letters, 25(12), 2675-2687. doi:10.1111/ele.14124, Institutional Repository
Drost, A. M., Siebers, A. R., Paillex, A., Misteli, B., Peeters, E. T. H. M., & Robinson, C. T. (2022). Long-lasting effects of experimental flow intermittency on alpine stream macroinvertebrates (Val Roseg, Switzerland). Hydrobiologia, 849, 1931-1946. doi:10.1007/s10750-022-04843-7, Institutional Repository
Ehmann, H., Hetzenauer, H., Härtl-Brandl, K., Hutter, G., Kuhn, G., Noffke, A., … Wolf, T. (2022). Limnologischer Zustand des Bodensees. A - aktueller Teil. B - Jahresbericht 2020/2021 (Jahresbericht der internationalen Gewässerschutzkommission für den Bodensee: limnologischer Zustand des Bodensees, Report No.: 44). Retrieved from https://www.igkb.org/fileadmin/user_upload/dokumente/publikationen/gruene_berichte/44_gb44gesamtbericht.pdf, Institutional Repository
Farinha, A. T., di Tria, J., Reyes, M., Rosas, C., Pang, O., Zufferey, R., … Kovac, M. (2022). Off-shore and underwater sampling of aquatic environments with the aerial-aquatic drone MEDUSA. Frontiers in Environmental Science, 10, 1023269 (12 pp.). doi:10.3389/fenvs.2022.1023269, Institutional Repository
Feijen, F., Zajac, N., Vorburger, C., Blasco-Costa, I., & Jokela, J. (2022). Phylogeography and cryptic species structure of a locally adapted parasite in New Zealand. Molecular Ecology, 31(15), 4112-4126. doi:10.1111/mec.16570, Institutional Repository
Fišer, C., Borko, Š., Delić, T., Kos, A., Premate, E., Zagmajster, M., … Altermatt, F. (2022). The European Green Deal misses Europe's subterranean biodiversity hotspots. Nature Ecology & Evolution, 6, 1403-1404. doi:10.1038/s41559-022-01859-z, Institutional Repository
Gallego, I., & Narwani, A. (2022). Ecology and evolution of competitive trait variation in natural phytoplankton communities under selection. Ecology Letters, 25, 2397-2409. doi:10.1111/ele.14103, Institutional Repository
Gebert, F., Obrist, M. K., Siber, R., Altermatt, F., Bollmann, K., & Schuwirth, N. (2022). Recent trends in stream macroinvertebrates: warm-adapted and pesticide-tolerant taxa increase in richness. Biology Letters, 18(3), 20210513 (7 pp.). doi:10.1098/rsbl.2021.0513, Institutional Repository
Gilarranz, L. J., Narwani, A., Odermatt, D., Siber, R., & Dakos, V. (2022). Regime shifts, trends, and variability of lake productivity at a global scale. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(35), e2116413119 (6 pp.). doi:10.1073/pnas.2116413119, Institutional Repository
Govaert, L., Pantel, J. H., & De Meester, L. (2022). Quantifying eco-evolutionary contributions to trait divergence in spatially structured systems. Ecological Monographs, 92(4), e1531 (21 pp.). doi:10.1002/ecm.1531, Institutional Repository
Guntern, J., Altermatt, F., Seehausen, O., Stamm, C., & van der Heijden, M. (2022). Auswirkungen übermässiger Stickstoff- und Phosphoreinträge auf die Biodiversität. Umweltrecht in der Praxis, 36(7), 735-752. , Institutional Repository
Haltiner, L., Zhang, H., Anneville, O., De Ventura, L., DeWeber, J. T., Hesselschwerdt, J., … Dennis, S. R. (2022). The distribution and spread of quagga mussels in perialpine lakes north of the Alps. Aquatic Invasions, 17(2), 153-173. doi:10.3391/ai.2022.17.2.02, Institutional Repository
Hattich, G. S. I., Listmann, L., Govaert, L., Pansch, C., Reusch, T. B. H., & Matthiessen, B. (2022). Experimentally decomposing phytoplankton community change into ecological and evolutionary contributions. Functional Ecology, 36(1), 120-132. doi:10.1111/1365-2435.13923, Institutional Repository
Hauer, F. R., Lorang, M. S., & Gonser, T. (2022). Remote sensing to characterize river floodplain structure and function. Remote Sensing, 14(5), 1132 (22 pp.). doi:10.3390/rs14051132, Institutional Repository
Henry, Y., Brechbühler, E., & Vorburger, C. (2022). Gated communities: inter- and intraspecific diversity of endosymbionts across four sympatric aphid species. Frontiers in Ecology and Evolution, 10, 816184 (7 pp.). doi:10.3389/fevo.2022.816184, Institutional Repository
Ho, H. C., Brodersen, J., Gossner, M. M., Graham, C. H., Kaeser, S., Reji Chacko, M., … Altermatt, F. (2022). Blue and green food webs respond differently to elevation and land use. Nature Communications, 13(1), 6415 (12 pp.). doi:10.1038/s41467-022-34132-9, Institutional Repository
Holenstein, K., Harvey, E., & Altermatt, F. (2022). Patch size distribution affects species invasion dynamics in dendritic networks. Oikos, 2022, e08679 (11 pp.). doi:10.1111/oik.08679, Institutional Repository
Jacquet, C., Carraro, L., & Altermatt, F. (2022). Meta‐ecosystem dynamics drive the spatial distribution of functional groups in river networks. Oikos, 2022(11), e09372 (12 pp.). doi:10.1111/oik.09372, Institutional Repository
Jardim de Queiroz, L., Doenz, C. J., Altermatt, F., Alther, R., Borko, Š., Brodersen, J., … Seehausen, O. (2022). Climate, immigration and speciation shape terrestrial and aquatic biodiversity in the European Alps. Proceedings of the Royal Society B: Biological Sciences, 289(1980), 20221020 (10 pp.). doi:10.1098/rspb.2022.1020, Institutional Repository
Jog, M. G., Sackett, M. E., Kisty, S. D., Hansen, J. A., & Stephenson, J. F. (2022). The behaviour of infected guppies depends on social context, parasite tolerance and host sex. Animal Behaviour, 187, 97-104. doi:10.1016/j.anbehav.2022.03.001, Institutional Repository
Kaech, H., Jud, S., & Vorburger, C. (2022). Similar cost of Hamiltonella defensa in experimental and natural aphid‐endosymbiont associations. Ecology and Evolution, 12(1), e8551 (13 pp.). doi:10.1002/ece3.8551, Institutional Repository
Kahlert, M., Maaria Karjalainen, S., Keck, F., Kelly, M., Ramon, M., Rimet, F., … Zimmermann, J. (2022). Co-occurrence, ecological profiles and geographical distribution based on unique molecular identifiers of the common freshwater diatoms Fragilaria and Ulnaria. Ecological Indicators, 141, 109114 (13 pp.). doi:10.1016/j.ecolind.2022.109114, Institutional Repository
Keck, F., Hürlemann, S., Locher, N., Stamm, C., Deiner, K., & Altermatt, F. (2022). A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers. Metabarcoding and Metagenomics, 6, 117-131. doi:10.3897/mbmg.6.79351, Institutional Repository
Keck, F., Blackman, R. C., Bossart, R., Brantschen, J., Couton, M., Hürlemann, S., … Altermatt, F. (2022). Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology, 31(6), 1820-1835. doi:10.1111/mec.16364, Institutional Repository
Keck, F., Couton, M., & Altermatt, F. (2022). Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources, 23(4), 742-755. doi:10.1111/1755-0998.13746, Institutional Repository
Kyathanahally, S. P., Hardeman, T., Reyes, M., Merz, E., Bulas, T., Brun, P., … Baity-Jesi, M. (2022). Ensembles of data-efficient vision transformers as a new paradigm for automated classification in ecology. Scientific Reports, 12, 18590 (11 pp.). doi:10.1038/s41598-022-21910-0, Institutional Repository
Leu, M., Bucher, H., Vennemann, T., Bagherpour, B., Ji, C., Brosse, M., & Goudemand, N. (2022). A Unitary Association-based conodont biozonation of the Smithian-Spathian boundary (Early Triassic) and associated biotic crisis from South China. Swiss Journal of Palaeontology, 141(1), 19 (61 pp.). doi:10.1186/s13358-022-00259-x, Institutional Repository
Li, F., Zhang, Y., Altermatt, F., Zhang, X., Cai, Y., & Yang, Z. (2022). Gap analysis for DNA-based biomonitoring of aquatic ecosystems in China. Ecological Indicators, 137, 108732 (11 pp.). doi:10.1016/j.ecolind.2022.108732, Institutional Repository
Llaberia-Robledillo, M., Balbuena, J. A., Sarabeev, V., & Llopis-Belenguer, C. (2022). Changes in native and introduced host–parasite networks. Biological Invasions, 24, 543-555. doi:10.1007/s10530-021-02657-7, Institutional Repository
Luo, M., Wang, S., Saavedra, S., Ebert, D., & Altermatt, F. (2022). Multispecies coexistence in fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(37), e2201503119 (8 pp.). doi:10.1073/pnas.2201503119, Institutional Repository
Mathers, K. L., Robinson, C. T., & Weber, C. (2022). Patchiness in flow refugia use by macroinvertebrates following an artificial flood pulse. River Research and Applications, 38, 696-707. doi:10.1002/rra.3941, Institutional Repository
Mausbach, J., Laurila, A., & Räsänen, K. (2022). Context dependent variation in corticosterone and phenotypic divergence of Rana arvalis populations along an acidification gradient. BMC Ecology and Evolution, 22(1), 11 (19 pp.). doi:10.1186/s12862-022-01967-1, Institutional Repository
Moerman, F., Fronhofer, E. A., Altermatt, F., & Wagner, A. (2022). Selection on growth rate and local adaptation drive genomic adaptation during experimental range expansions in the protist Tetrahymena thermophila. Journal of Animal Ecology, 91(6), 1088-1103. doi:10.1111/1365-2656.13598, Institutional Repository
Moor, H., Bergamini, A., Vorburger, C., Holderegger, R., Bühler, C., Egger, S., & Schmidt, B. R. (2022). Bending the curve: simple but massive conservation action leads to landscape-scale recovery of amphibians. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(42), e2123070119 (8 pp.). doi:10.1073/pnas.2123070119, Institutional Repository
Moor, H., Gossner, M. M., Graham, C., Hobi, M. L., Logar, I., Narwani, A., … Altermatt, F. (2022). Besserer Biodiversitätsschutz in Blau-Grünen Ökosystemen. Des écosystèmes bleus-verts pour mieux protéger la biodiversité. Nature et Paysage. Natur und Landschaft: Inside (1), 25-29. , Institutional Repository
Moor, H., Gossner, M. M., Graham, C., Hobi, M. L., Logar, I., Matthews, B., … Altermatt, F. (2022). Blau-grüne Biodiversität ist ein wichtiger Teil des Waldes. Wald und Holz, 103(4), 30-33. , Institutional Repository
Moza, M. I., & Postolache, C. (2022). Optimized protocol for cyanobacterial 16s rrna analysis in Danube Delta lakes. Biointerface Research in Applied Chemistry, 12(2), 1365-1384. doi:10.33263/BRIAC122.13651384, Institutional Repository
Narayan, K. S., Vorburger, C., & Hafer‐Hahmann, N. (2022). Bottom‐up effect of host protective symbionts on parasitoid diversity: limited evidence from two field experiments. Journal of Animal Ecology, 91(3), 643-654. doi:10.1111/1365-2656.13650, Institutional Repository
Oester, R., dos Reis Oliveira, P. C., Moretti, M. S., Altermatt, F., & Bruder, A. (2022). Leaf-associated macroinvertebrate assemblage and leaf litter breakdown in headwater streams depend on local riparian vegetation. Hydrobiologia. doi:10.1007/s10750-022-05049-7, Institutional Repository
Olive, M., Moerman, F., Fernandez-Cassi, X., Altermatt, F., & Kohn, T. (2022). Removal of waterborne viruses by Tetrahymena pyriformis is virus-specific and coincides with changes in protist swimming speed. Environmental Science and Technology, 56(7), 4062-4070. doi:10.1021/acs.est.1c05518, Institutional Repository
Palamara, G. M., Dennis, S. R., Haenggi, C., Schuwirth, N., & Reichert, P. (2022). Investigating the effect of pesticides on Daphnia population dynamics by inferring structure and parameters of a stochastic model. Ecological Modelling, 472, 110076 (13 pp.). doi:10.1016/j.ecolmodel.2022.110076, Institutional Repository
Parreño, M. A., Petchey, S., Chapman, M., Altermatt, F., Backhaus, N., Deplazes-Zemp, A., … Petchey, O. L. (2022). How puzzles are shaping our understanding of biodiversity. A call for more research into biodiversity representation in educational games. GAIA: Ecological Perspectives for Science and Society, 31(3), 139-145. doi:10.14512/gaia.31.3.3, Institutional Repository
Peszek, Ł., Kawecka, B., & Robinson, C. T. (2022). Long-term response of diatoms in high-elevation streams influenced by rock glaciers. Ecological Indicators, 144, 109515 (12 pp.). doi:10.1016/j.ecolind.2022.109515, Institutional Repository
Pomati, F., Reyes, M., Narwani, A., Fischer, R., & Ptacnik, R. (2022). A diversity of primary producers in lakes. In T. Mehner, K. Tockner, D. Bouffard, M. E. Perga, & L. R. Poff (Eds.), Vol. 2. Encyclopedia of inland waters (pp. 1-13). doi:10.1016/B978-0-12-819166-8.00019-0, Institutional Repository
Puccinelli, E., Zeppilli, D., Stefanoudis, P. V., Wittische-Helou, A., Kermorgant, M., Fuchs, S., … Weber, A. A. T. (2022). Hybrid conferences: opportunities, challenges and ways forward. Frontiers in Marine Science, 9, 902772 (13 pp.). doi:10.3389/fmars.2022.902772, Institutional Repository
Rajarajan, A., Wolinska, J., Walser, J. C., Dennis, S. R., & Spaak, P. (2022). Host-associated bacterial communities vary between Daphnia galeata genotypes but not by host genetic distance. Microbial Ecology. doi:10.1007/s00248-022-02011-x, Institutional Repository
Rajarajan, A., Wolinska, J., Walser, J. C., Mäder, M., & Spaak, P. (2022). Infection by a eukaryotic gut parasite in wild Daphnia sp. associates with a distinct bacterial community. FEMS Microbiology Ecology, 98(10), fiac097 (9 pp.). doi:10.1093/femsec/fiac097, Institutional Repository
Robinson, C. T., Jolidon, C., Consoli, G., Bloem, S., & Ebi, C. (2022). Temporal dynamics in the physico-chemistry of a high-alpine stream network in the Swiss National Park. eco.mont, 14(2), 11-23. doi:10.1553/eco.mont-14-2s11, Institutional Repository
Scaramella, N., Mausbach, J., Laurila, A., Stednitz, S., & Räsänen, K. (2022). Short-term responses of Rana arvalis tadpoles to pH and predator stress: adaptive divergence in behavioural and physiological plasticity?. Journal of Comparative Physiology B, 192, 669-682. doi:10.1007/s00360-022-01449-2, Institutional Repository
Sendek, A., Baity-Jesi, M., Altermatt, F., Bader, M. K. F., Liebhold, A. M., Turner, R. M., … Brockerhoff, E. G. (2022). Fewer non-native insects in freshwater than in terrestrial habitats across continents. Diversity and Distributions, 28(11), 2303-2315. doi:10.1111/ddi.13622, Institutional Repository
Seppälä, O., Yohannes, E., & Salo, T. (2022). Condition-dependent immune function in a freshwater snail revealed by stable isotopes. Freshwater Biology, 67(7), 1287-1297. doi:10.1111/fwb.13917, Institutional Repository
Shaw, K., Vogel, M., Andriessen, N., Hardeman, T., Dorea, C. C., & Strande, L. (2022). Towards globally relevant, small-footprint dewatering solutions: Optimal conditioner dose for highly variable blackwater from non-sewered sanitation. Journal of Environmental Management, 321, 115961 (11 pp.). doi:10.1016/j.jenvman.2022.115961, Institutional Repository
Sieber, N., Hartikainen, H., Krieg, R., Zenker, A., & Vorburger, C. (2022). Parasite DNA detection in water samples enhances crayfish plague monitoring in asymptomatic invasive populations. Biological Invasions, 24, 281-297. doi:10.1007/s10530-021-02644-y, Institutional Repository
Siebers, A. R., Paillex, A., & Robinson, C. T. (2022). Seasonal and functional variation in the trophic base of intermittent Alpine streams. Limnology and Oceanography, 67(5), 1098-1110. doi:10.1002/lno.12059, Institutional Repository
Smolander, O. P., Blande, D., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., … Saastamoinen, M. (2022). Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map. GigaScience, 11, giab097 (12 pp.). doi:10.1093/gigascience/giab097, Institutional Repository
Sommerwerk, N., Bloesch, J., Baumgartner, C., Bittl, T., Čerba, D., Csányi, B., … Ungureanu, L. (2022). The Danube River Basin. In K. Tockner, C. Zarfl, & C. T. Robinson (Eds.), Rivers of Europe (pp. 81-180). doi:10.1016/B978-0-08-102612-0.00003-1, Institutional Repository
Stritt, C., Gimmi, E. L., Wyler, M., Bakali, A. H., Skalska, A., Hasterok, R., … Roulin, A. C. (2022). Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1), 70-85. doi:10.1111/mec.16207, Institutional Repository
Studer, A., Knüsel, M., Alther, R., Hürlemann, S., & Altermatt, F. (2022). Erfassung der Grundwasserflohkrebse. Studie zur Artenvielfalt und Verbreitung im Einzugsgebiet der Töss. Aqua & Gas, 102(4), 14-19. , Institutional Repository
Su, E., S. Fischer, R. Demmer-Steingruber, Nigg, S., Güsewell, S., Albrich, W. C., … Kahlert, C. R. (2022). Humoral and cellular responses to mRNA-based COVID-19 booster vaccinations in patients with solid neoplasms under active treatment. ESMO Open, 7(5), 100587 (11 pp.). doi:10.1016/j.esmoop.2022.100587, Institutional Repository
Tamminen, M., Spaak, J., Tlili, A., Eggen, R., Stamm, C., & Räsänen, K. (2022). Wastewater constituents impact biofilm microbial community in receiving streams. Science of the Total Environment, 807(3), 151080 (8 pp.). doi:10.1016/j.scitotenv.2021.151080, Institutional Repository
Tockner, K., Tonolla, D., Bremerich, V., Jähnig, S. C., Robinson, C. T., & Zarfl, C. (2022). Introduction to European rivers. In K. Trockner, C. Zarfl, & C. T. Robinson (Eds.), Rivers of Europe (pp. 1-26). doi:10.1016/B978-0-08-102612-0.00001-8, Institutional Repository
Tockner, K., Zarfl, C., & Robinson, C. T. (2022). Rivers of Europe (2nd ed.). doi:10.1016/B978-0-08-102612-0.01001-4, Institutional Repository
Tomanović, Ž., Kavallieratos, N. G., Ye, Z., Nika, E. P., Petrović, A., Vollhardt, I. M. G., & Vorburger, C. (2022). Cereal aphid parasitoids in Europe (Hymenoptera: Braconidae: Aphidiinae): taxonomy, biodiversity, and ecology. Insects, 13(12), 1142 (25 pp.). doi:10.3390/insects13121142, Institutional Repository
Travers Cook, T. J., Skirgaila, C., Martin, O. Y., & Buser, C. C. (2022). Infection by dsRNA viruses is associated with enhanced sporulation efficiency in Saccharomyces cerevisiae. Ecology and Evolution, 12(1), e8558 (8 pp.). doi:10.1002/ece3.8558, Institutional Repository
Twining, C. W., Weber, C., Kowarik, C., Gossner, M. M., Graham, C. H., Matthews, B., & Shipley, J. R. (2022). Zum Fressen gern: unsere Gewässer aus der Vogelperspektive. Wasser, Energie, Luft, 114(2), 68-74. , Institutional Repository
Udodenko, Y. G., Robinson, C. T., Choijil, J., Badrakh, R., Munkhbat, J., Ivanova, E. S., & Komov, V. T. (2022). Mercury levels in sediment, fish and macroinvertebrates of the Boroo River, northern Mongolia, under the legacy of gold mining. Ecotoxicology, 31, 312-323. doi:10.1007/s10646-021-02502-6, Institutional Repository
Vorburger, C. (2022). Defensive symbionts and the evolution of parasitoid host specialization. Annual Review of Entomology, 67, 329-346. doi:10.1146/annurev-ento-072621-062042, Institutional Repository
Zia, A., Schroth, A. W., Hecht, J. S., Isles, P., Clemins, P. J., Turnbull, S., … Pinder, G. (2022). Climate change-legacy phosphorus synergy hinders lake response to aggressive water policy targets. Earth's Future, 10(5), e2021EF002234 (17 pp.). doi:10.1029/2021EF002234, Institutional Repository
van Moorsel, S. J., Thébault, E., Radchuk, V., Narwani, A., Montoya, J. M., Dakos, V., … Pennekamp, F. (2022). Predicting effects of multiple interacting global change drivers across trophic levels. Global Change Biology. doi:10.1111/gcb.16548, Institutional Repository
Çetin, C., Furman, A., Kalkan, E., & Bilgin, R. (2022). Mitonuclear genetic patterns of divergence in the marbled crab, Pachygrapsus marmoratus (Fabricius, 1787) along the Turkish seas. PLoS One, 17(4), e0266506 (21 pp.). doi:10.1371/journal.pone.0266506, Institutional Repository


Alther, R., Bongni, N., Borko, Š., Fišer, C., & Altermatt, F. (2021). Citizen science approach reveals groundwater fauna in Switzerland and a new species of Niphargus (Amphipoda, Niphargidae). Subterranean Biology, 39, 1-31. doi:10.3897/subtbiol.39.66755, Institutional Repository
Alther, R., & Altermatt, F. (2021). Die unterirdische Flohkrebsfauna der Schweiz. La faune souterraine d'amphipodes de Suisse. Stalactite, 71(1), 72-81. , Institutional Repository
Alther, R., Fronhofer, E. A., & Altermatt, F. (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30, 6551-6565. doi:10.1111/mec.16201, Institutional Repository
Blackman, R. C., Osathanunkul, M., Brantschen, J., Di Muri, C., Harper, L. R., Mächler, E., … Altermatt, F. (2021). Mapping biodiversity hotspots of fish communities in subtropical streams through environmental DNA. Scientific Reports, 11, 10375 (11 pp.). doi:10.1038/s41598-021-89942-6, Institutional Repository
Blackman, R. C., Altermatt, F., Foulquier, A., Lefébure, T., Gauthier, M., Bouchez, A., … Datry, T. (2021). Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment, 19(10), 574-583. doi:10.1002/fee.2404, Institutional Repository
Brantschen, J., Blackman, R. C., Walser, J. C., & Altermatt, F. (2021). Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment. PLoS One, 16(9), e0257510 (19 pp.). doi:10.1371/journal.pone.0257510, Institutional Repository
Briscoe, A. G., Nichols, S., Hartikainen, H., Knipe, H., Foster, R., Green, A. J., … Bass, D. (2021). High-throughput sequencing of faeces provides evidence for dispersal of parasites and pathogens by migratory waterbirds. Molecular Ecology Resources, 22(4), 1303-1318. doi:10.1111/1755-0998.13548, Institutional Repository
Buser, C. C., Jokela, J., & Martin, O. Y. (2021). Scent of a killer: how could killer yeast boost its dispersal?. Ecology and Evolution, 11(11), 5809-5814. doi:10.1002/ece3.7534, Institutional Repository
Carraro, L., Stauffer, J. B., & Altermatt, F. (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1), 157-172. doi:10.1002/edn3.137, Institutional Repository
Chalifour, A., Walser, J. C., Pomati, F., & Fenner, K. (2021). Temperature, phytoplankton density and bacteria diversity drive the biotransformation of micropollutants in a lake ecosystem. Water Research, 202, 117412 (10 pp.). doi:10.1016/j.watres.2021.117412, Institutional Repository
Clark, A. T., Arnoldi, J. F., Zelnik, Y. R., Barabas, G., Hodapp, D., Karakoç, C., … Harpole, S. (2021). General statistical scaling laws for stability in ecological systems. Ecology Letters, 24, 1474-1486. doi:10.1111/ele.13760, Institutional Repository
Comte, L., Carvajal-Quintero, J., Tedesco, P. A., Giam, X., Brose, U., Erős, T., … Olden, J. D. (2021). RivFishTIME: a global database of fish time-series to study global change ecology in riverine systems. Global Ecology and Biogeography, 30(1), 38-50. doi:10.1111/geb.13210, Institutional Repository
Consoli, G., Lepori, F., Robinson, C. T., & Bruder, A. (2021). Predicting macroinvertebrate responses to water abstraction in alpine streams. Water, 13(15), 2121 (22 pp.). doi:10.3390/w13152121, Institutional Repository
Des Roches, S., Brans, K. I., Lambert, M. R., Rivkin, L. R., Savage, A. M., Schell, C. J., … Alberti, M. (2021). Socio-eco-evolutionary dynamics in cities. Evolutionary Applications, 14(1), 248-267. doi:10.1111/eva.13065, Institutional Repository
Doering, M., Freimann, R., Antenen, N., Roschi, A., Robinson, C. T., Rezzonico, F., … Tonolla, D. (2021). Microbial communities in floodplain ecosystems in relation to altered flow regimes and experimental flooding. Science of the Total Environment, 788, 147497 (13 pp.). doi:10.1016/j.scitotenv.2021.147497, Institutional Repository
Donis, D., Mantzouki, E., McGinnis, D. F., Vachon, D., Gallego, I., Grossart, H. P., … Ibelings, B. W. (2021). Stratification strength and light climate explain variation in chlorophyll a at the continental scale in a European multilake survey in a heatwave summer. Limnology and Oceanography, 66(12), 4314-4333. doi:10.1002/lno.11963, Institutional Repository
D’Alelio, D., Russo, L., Hay Mele, B., & Pomati, F. (2021). Intersecting ecosystem services across the aquatic continuum: from global change impacts to local, and biologically driven, synergies and trade-offs. Frontiers in Ecology and Evolution, 9, 628658 (9 pp.). doi:10.3389/fevo.2021.628658, Institutional Repository
Ehrenfels, B., Bartosiewicz, M., Mbonde, A. S., Baumann, K. B. L., Dinkel, C., Junker, J., … Wehrli, B. (2021). Diazotrophic cyanobacteria are associated with a low nitrate resupply to surface waters in Lake Tanganyika. Frontiers in Environmental Science, 9, 716765 (16 pp.). doi:10.3389/fenvs.2021.716765, Institutional Repository
Excofffier, L., Marchi, N., Marques, D. A., Matthey-Doret, R., Gouy, A., & Sousa, V. C. (2021). fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), 4882-4885. doi:10.1093/bioinformatics/btab468, Institutional Repository
Fontana, S., Rasmann, S., de Bello, F., Pomati, F., & Moretti, M. (2021). Reconciling trait based perspectives along a trait-integration continuum. Ecology, 102(10), e03472 (10 pp.). doi:10.1002/ecy.3472, Institutional Repository
Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J. M., … Drezen, J. M. (2021). Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology, 4(1), 104 (15 pp.). doi:10.1038/s42003-020-01623-8, Institutional Repository
Giacomuzzo, E., & Jordán, F. (2021). Food web aggregation: effects on key positions. Oikos, 130(12), 2170-2181. doi:10.1111/oik.08541, Institutional Repository
Gimmi, E., & Vorburger, C. (2021). Strong genotype-by-genotype interactions between aphid-defensive symbionts and parasitoids persist across different biotic environments. Journal of Evolutionary Biology, 34(12), 1944-1953. doi:10.1111/jeb.13953, Institutional Repository
Govaert, L., Gilarranz, L. J., & Altermatt, F. (2021). Competition alters species' plastic and genetic response to environmental change. Scientific Reports, 11, 23518 (14 pp.). doi:10.1038/s41598-021-02841-8, Institutional Repository
Govaert, L., De Meester, L., Spaak, P., & Hairston Jr., N. G. (2021). Eco-evolutionary dynamics in freshwater systems. In T. Mehner & K. Tockner (Eds.), Vol. 1. Encyclopedia of inland waters (pp. 302-316). doi:10.1016/B978-0-12-819166-8.00028-1, Institutional Repository
Govaert, L., Altermatt, F., De Meester, L., Leibold, M. A., McPeek, M. A., Pantel, J. H., & Urban, M. C. (2021). Integrating fundamental processes to understand eco-evolutionary community dynamics and patterns. Functional Ecology, 35(10), 2138-2155. doi:10.1111/1365-2435.13880, Institutional Repository
Govaert, L., De Meester, L., Rousseaux, S., Declerck, S. A. J., & Pantel, J. H. (2021). Measuring the contribution of evolution to community trait structure in freshwater zooplankton. Oikos, 130(10), 1773-1787. doi:10.1111/oik.07885, Institutional Repository
Gómez-Gener, L., Siebers, A. R., Arce, M. I., Arnon, S., Bernal, S., Bolpagni, R., … Zoppini, A. (2021). Towards an improved understanding of biogeochemical processes across surface-groundwater interactions in intermittent rivers and ephemeral streams. Earth-Science Reviews, 220, 103724 (17 pp.). doi:10.1016/j.earscirev.2021.103724, Institutional Repository
Hafer-Hahmann, N., & Vorburger, C. (2021). Positive association between the diversity of symbionts and parasitoids of aphids in field populations. Ecosphere, 12(1), e03355 (11 pp.). doi:10.1002/ecs2.3355, Institutional Repository
Harper, L. R., Lawson Handley, L., Sayer, C. D., Read, D. S., Benucci, M., Blackman, R. C., … Hänfling, B. (2021). Assessing the impact of the threatened crucian carp (Carassius carassius) on pond invertebrate diversity: A comparison of conventional and molecular tools. Molecular Ecology, 30, 3252-3269. doi:10.1111/mec.15670, Institutional Repository
Hertaeg, C., Risse, M., Vorburger, C., De Moraes, C. M., & Mescher, M. C. (2021). Aphids harbouring different endosymbionts exhibit differences in cuticular hydrocarbon profiles that can be recognized by ant mutualists. Scientific Reports, 11, 19559 (10 pp.). doi:10.1038/s41598-021-98098-2, Institutional Repository
Horváthová, T., Šustr, V., Chroňáková, A., Semanová, S., Lang, K., Dietrich, C., … Šimek, M. (2021). Methanogenesis in the digestive tracts of the tropical millipedes Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae). Applied and Environmental Microbiology, 87(15), e00614-21 (13 pp.). doi:10.1128/AEM.00614-21, Institutional Repository
Hrycik, A. R., Isles, P. D. F., Adrian, R., Albright, M., Bacon, L. C., Berger, S. A., … Pierson, D. C. (2021). Earlier winter/spring runoff and snowmelt during warmer winters lead to lower summer chlorophyll-a in north temperate lakes. Global Change Biology, 27(19), 4615-4629. doi:10.1111/gcb.15797, Institutional Repository
Hudson, C. M., Lucek, K., Marques, D. A., Alexander, T. J., Moosmann, M., Spaak, P., … Matthews, B. (2021). Threespine stickleback in Lake Constance: the ecology and genomic substrate of a recent invasion. Frontiers in Ecology and Evolution, 8, 611672 (22 pp.). doi:10.3389/fevo.2020.611672, Institutional Repository
Isles, P. D. F., & Pomati, F. (2021). An operational framework for defining and forecasting phytoplankton blooms. Frontiers in Ecology and the Environment, 19(8), 443-450. doi:10.1002/fee.2376, Institutional Repository
Isles, P. D. F., Creed, I. F., Jonsson, A., & Bergström, A. K. (2021). Trade-offs between light and nutrient availability across gradients of dissolved organic carbon lead to spatially and temporally variable responses of lake phytoplankton biomass to browning. Ecosystems, 24, 1837-1852. doi:10.1007/s10021-021-00619-7, Institutional Repository
Jähnig, S. C., Baranov, V., Altermatt, F., Cranston, P., Friedrichs-Manthey, M., Geist, J., … Domisch, S. (2021). Revisiting global trends in freshwater insect biodiversity. Wiley Interdisciplinary Reviews: Water, 8(2), e1506 (5 pp.). doi:10.1002/wat2.1506, Institutional Repository
Kaech, H., & Vorburger, C. (2021). Horizontal transmission of the heritable protective endosymbiont Hamiltonella defensa depends on titre and haplotype. Frontiers in Microbiology, 11, 628755 (10 pp.). doi:10.3389/fmicb.2020.628755, Institutional Repository
Kaech, H., Dennis, A. B., & Vorburger, C. (2021). Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa. BMC Genomics, 22, 449 (21 pp.). doi:10.1186/s12864-021-07742-8, Institutional Repository
Kakouei, K., Kraemer, B. M., Anneville, O., Carvalho, L., Feuchtmayr, H., Graham, J. L., … Adrian, R. (2021). Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections. Global Change Biology, 27(24), 6409-6422. doi:10.1111/gcb.15866, Institutional Repository
Kowarik, C., Martin-Creuzburg, D., & Robinson, C. T. (2021). Cross-ecosystem linkages: transfer of polyunsaturated fatty acids from streams to riparian spiders via emergent insects. Frontiers in Ecology and Evolution, 9, 707570 (20 pp.). doi:10.3389/fevo.2021.707570, Institutional Repository
Kyathanahally, S. P., Hardeman, T., Merz, E., Bulas, T., Reyes, M., Isles, P., … Baity-Jesi, M. (2021). Deep learning classification of Lake Zooplankton. Frontiers in Microbiology, 12, 746297 (13 pp.). doi:10.3389/fmicb.2021.746297, Institutional Repository
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Larsen, S., Comte, L., Filipa Filipe, A., Fortin, M. J., Jacquet, C., Ryser, R., … Olden, J. D. (2021). The geography of metapopulation synchrony in dendritic river networks. Ecology Letters, 24(4), 791-801. doi:10.1111/ele.13699, Institutional Repository
Lau, D. C. P., Jonsson, A., Isles, P. D. F., Creed, I. F., & Bergström, A. ‑K. (2021). Lowered nutritional quality of plankton caused by global environmental changes. Global Change Biology, 27(23), 6294-6306. doi:10.1111/gcb.15887, Institutional Repository
Li, F., Zhang, Y., Altermatt, F., & Zhang, X. (2021). Consideration of multitrophic biodiversity and ecosystem functions improves indices on river ecological status. Environmental Science and Technology, 55(24), 16434-16444. doi:10.1021/acs.est.1c05899, Institutional Repository
Lürig, M. D., & Matthews, B. (2021). Dietary-based developmental plasticity affects juvenile survival in an aquatic detritivore. Proceedings of the Royal Society B: Biological Sciences, 288(1945), 20203136 (10 pp.). doi:10.1098/rspb.2020.3136, Institutional Repository
Lürig, M. D., Narwani, A., Penson, H., Wehrli, B., Spaak, P., & Matthews, B. (2021). Non‐additive effects of foundation species determine the response of aquatic ecosystems to nutrient perturbation. Ecology, 102(7), e03371 (14 pp.). doi:10.1002/ecy.3371, Institutional Repository
Lürig, M. D., Best, R. J., Dakos, V., & Matthews, B. (2021). Submerged macrophytes affect the temporal variability of aquatic ecosystems. Freshwater Biology, 66(3), 421-435. doi:10.1111/fwb.13648, Institutional Repository
Mathers, K. L., Robinson, C. T., & Weber, C. (2021). Artificial flood reduces fine sediment clogging enhancing hyporheic zone physicochemistry and accessibility for macroinvertebrates. Ecological Solutions and Evidence, 2(4), e12103 (14 pp.). doi:10.1002/2688-8319.12103, Institutional Repository
Mathers, K. L., Kowarik, C., Rachelly, C., Robinson, C. T., & Weber, C. (2021). The effects of sediment traps on instream habitat and macroinvertebrates of mountain streams. Journal of Environmental Management, 295, 113066 (11 pp.). doi:10.1016/j.jenvman.2021.113066, Institutional Repository
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Moerman, F. E. (2021). Understanding invasions - from the genetic basis to the ecological dynamics of spreading populations (Doctoral dissertation). Universität Zürich, Zürich, 388 p. , Institutional Repository
Monchamp, M. È., Bruel, R., Frossard, V., McGowan, S., Lavrieux, M., Muschick, M., … Dubois, N. (2021). Paleoecological evidence for a multi-trophic regime shift in a perialpine lake (Lake Joux, Switzerland). Anthropocene, 35, 100301 (13 pp.). doi:10.1016/j.ancene.2021.100301, Institutional Repository
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Moza, M. I., Postolache, C., Benedek, A. M., Moldoveanu, M., & Spaak, P. (2021). Geographical and temporal patterns of cyanobacterial assemblages in the Danube Delta lake complexes. Hydrobiologia, 848, 753-771. doi:10.1007/s10750-020-04466-w, Institutional Repository
Mächler, E., Walser, J. C., & Altermatt, F. (2021). Decision-making and best practices for taxonomy-free environmental DNA metabarcoding in biomonitoring using Hill numbers. Molecular Ecology, 30(13), 3326-3339. doi:10.1111/mec.15725, Institutional Repository
Mächler, E., Salyani, A., Walser, J. C., Larsen, A., Schaefli, B., Altermatt, F., & Ceperley, N. (2021). Environmental DNA simultaneously informs hydrological and biodiversity characterization of an Alpine catchment. Hydrology and Earth System Sciences, 25(2), 735-753. doi:10.5194/hess-25-735-2021, Institutional Repository
Nickel, J., Schell, T., Holtzem, T., Thielsch, A., Dennis, S. R., Schlick-Steiner, B. C., … Cordellier, M. (2021). Hybridization dynamics and extensive introgression in the Daphnia longispina species complex: new insights from a high-quality Daphnia galeata reference genome. Genome Biology and Evolution, 13(12), evab267 (23 pp.). doi:10.1093/gbe/evab267, Institutional Repository
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Packman, A. I., Robinson, C. T., & Lamouroux, N. (2021). Hydraulic drivers of populations, communities and ecosystem processes. Journal of Ecohydraulics, 6(2), 91-94. doi:10.1080/24705357.2021.1951506, Institutional Repository
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Polanco F., A., Richards, E., Flück, B., Valentini, A., Altermatt, F., Brosse, S., … Pellissier, L. (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6), 1113-1127. doi:10.1002/edn3.232, Institutional Repository
Pérez-Burillo, J., Trobajo, R., Leira, M., Keck, F., Rimet, F., Sigró, J., & Mann, D. G. (2021). DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species. Science of the Total Environment, 798, 149029 (17 pp.). doi:10.1016/j.scitotenv.2021.149029, Institutional Repository
Reinl, K. L., Brookes, J. D., Carey, C. C., Harris, T. D., Ibelings, B. W., Morales-Williams, A. M., … Zhan, Q. (2021). Cyanobacterial blooms in oligotrophic lakes: shifting the high-nutrient paradigm. Freshwater Biology, 66(9), 1846-1859. doi:10.1111/fwb.13791, Institutional Repository
Seppälä, O., Çetin, C., Cereghetti, T., Feulner, P. G. D., & Adema, C. M. (2021). Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1825), 20200158 (9 pp.). doi:10.1098/rstb.2020.0158, Institutional Repository
Seppälä, O., Walser, J. C., Cereghetti, T., Seppälä, K., Salo, T., & Adema, C. M. (2021). Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research. BMC Genomics, 22(1), 144 (16 pp.). doi:10.1186/s12864-021-07428-1, Institutional Repository
Sertić Perić, M., Nielsen, J. M., Schubert, C. J., & Robinson, C. T. (2021). Does rapid glacial recession affect feeding habits of alpine stream insects?. Freshwater Biology, 66(1), 114-129. doi:10.1111/fwb.13621, Institutional Repository
Siebers, A. R., Paillex, A., & Robinson, C. T. (2021). Riparian hunting spiders do not rely on aquatic subsidies from intermittent alpine streams. Aquatic Sciences, 83(2), 25 (11 pp.). doi:10.1007/s00027-021-00779-7, Institutional Repository
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Taddei, A., Räsänen, K., & Burdon, F. J. (2021). Size-dependent sensitivity of stream amphipods indicates population-level responses to chemical pollution. Freshwater Biology, 66(4), 765-784. doi:10.1111/fwb.13677, Institutional Repository
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Thalinger, B., Kirschner, D., Pütz, Y., Moritz, C., Schwarzenberger, R., Wanzenböck, J., & Traugott, M. (2021). Lateral and longitudinal fish environmental DNA distribution in dynamic riverine habitats. Environmental DNA, 3(1), 305-318. doi:10.1002/edn3.171, Institutional Repository
Thompson, P., Hürlemann, S., & Altermatt, F. (2021). Species interactions limit the predictability of community responses to environmental change. American Naturalist, 198(6), 695-705. doi:10.1086/716724, Institutional Repository
Twining, C. W., Bernhardt, J. R., Derry, A. M., Hudson, C. M., Ishikawa, A., Kabeya, N., … Matthews, B. (2021). The evolutionary ecology of fatty-acid variation: implications for consumer adaptation and diversification. Ecology Letters, 24(8), 1709-1731. doi:10.1111/ele.13771, Institutional Repository
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Widmer, I., Mühlethaler, R., Baur, B., Gonseth, Y., Guntern, J., Klaus, G., … Altermatt, F. (2021). Diversité des insectes en Suisse. Importance, tendances, actions possibles (Swiss Academies reports, Report No.: 16/9). doi:10.5281/zenodo.5144800, Institutional Repository
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Zajac, N., Zoller, S., Seppälä, K., Moi, D., Dessimoz, C., Jokela, J., … Glover, N. (2021). Gene duplication and gain in the trematode Atriophallophorus winterbourni contributes to adaptation to parasitism. Genome Biology and Evolution, 13(3), evab010 (16 pp.). doi:10.1093/gbe/evab010, Institutional Repository
Zhang, C., Jones, M., Govaert, L., Viant, M., De Meester, L., & Stoks, R. (2021). Resurrecting the metabolome: rapid evolution magnifies the metabolomic plasticity to predation in a natural Daphnia population. Molecular Ecology, 30(10), 2285-2297. doi:10.1111/mec.15886, Institutional Repository


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Archambeault, S. L., Durston, D. J., Wan, A., El‐Sabaawi, R. W., Matthews, B., & Peichel, C. L. (2020). Phosphorus limitation does not drive loss of bony lateral plates in freshwater stickleback (Gasterosteus aculeatus). Evolution, International Journal of Organic Evolution, 74(9), 2088-2104. doi:10.1111/evo.14044, Institutional Repository
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Beck, S. V., Räsänen, K., Leblanc, C. A., Skúlason, S., Jónsson, Z. O., & Kristjánsson, B. K. (2020). Differences among families in craniofacial shape at early life-stages of Arctic charr (Salvelinus alpinus). BMC Developmental Biology, 20(1), 21 (15 pp.). doi:10.1186/s12861-020-00226-0, Institutional Repository
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Bernhard, G. H., Neale, R. E., Barnes, P. W., Neale, P. J., Zepp, R. G., Wilson, S. R., … White, C. C. (2020). Environmental effects of stratospheric ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2019. Photochemical and Photobiological Sciences, 19(5), 542-584. doi:10.1039/d0pp90011g, Institutional Repository
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Blackman, R. C., Benucci, M., Donnelly, R. C., Hänfling, B., Harper, L. R., Sellers, G. S., & Lawson Handley, L. (2020). Simple, sensitive and species-specific assays for detecting quagga and zebra mussels (Dreissena rostriformis bugensis and D. polymorpha) using environmental DNA. Management of Biological Invasions, 11(2), 218-236. doi:10.3391/mbi.2020.11.2.04, Institutional Repository
Blackman, R. C., Ling, K. K. S., Harper, L. R., Shum, P., Hänfling, B., & Lawson-Handley, L. (2020). Targeted and passive environmental DNA approaches outperform established methods for detection of quagga mussels, Dreissena rostriformis bugensis in flowing water. Ecology and Evolution, 10(23), 13248-13259. doi:10.1002/ece3.6921, Institutional Repository
Blasco-Costa, I., Seppälä, K., Feijen, F., Zajac, N., Klappert, K., & Jokela, J. (2020). A new species of Atriophallophorus Deblock & Rosé, 1964 (Trematoda: Microphallidae) described from in vitro-grown adults and metacercariae from Potamopyrgus antipodarum (Gray, 1843) (Mollusca: Tateidae). Journal of Helminthology, 94, e108 (15 pp.). doi:10.1017/S0022149X19000993, Institutional Repository
Brans, K. I., Govaert, L., & De Meester, L. (2020). Evolutionary dynamics of metacommunities in urbanized landscapes. In M. Szulkin, J. Munshi-South, & A. Charmantier (Eds.), Urban evolutionary biology (pp. 175-196). doi:10.1093/oso/9780198836841.003.0011, Institutional Repository
Brantschen, J., Gygax, S., Mestrot, A., & Frossard, A. (2020). Soil Hg contamination impact on earthworms' gut microbiome. Applied Sciences, 10(7), 2565 (19 pp.). doi:10.3390/app10072565, Institutional Repository
Burdon, F. J. (2020). Agriculture and mining contamination contribute to a productivity gradient driving cross-ecosystem associations between stream insects and riparian arachnids. In J. M. Kraus, D. M. Walters, & M. A. Mills (Eds.), Contaminants and ecological subsidies. The land-water interface (pp. 61-90). doi:10.1007/978-3-030-49480-3_4, Institutional Repository
Burdon, F. J., McIntosh, A. R., & Harding, J. S. (2020). Mechanisms of trophic niche compression: evidence from landscape disturbance. Journal of Animal Ecology, 89, 730-744. doi:10.1111/1365-2656.13142, Institutional Repository
Burdon, F. J., Bai, Y., Reyes, M., Tamminen, M., Staudacher, P., Mangold, S., … Stamm, C. (2020). Stream microbial communities and ecosystem functioning show complex responses to multiple stressors in wastewater. Global Change Biology, 26(11), 6363-6382. doi:10.1111/gcb.15302, Institutional Repository
Cairns, J., Moerman, F., Fronhofer, E. A., Altermatt, F., & Hiltunen, T. (2020). Evolution in interacting species alters predator life-history traits, behaviour and morphology in experimental microbial communities. Proceedings of the Royal Society B: Biological Sciences, 287(1928), 20200652 (10 pp.). doi:10.1098/rspb.2020.0652, Institutional Repository
Carraro, L., Mächler, E., Wüthrich, R., & Altermatt, F. (2020). Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems. Nature Communications, 11, 3585 (12 pp.). doi:10.1038/s41467-020-17337-8, Institutional Repository
Carraro, L., Bertuzzo, E., Fronhofer, E. A., Furrer, R., Gounand, I., Rinaldo, A., & Altermatt, F. (2020). Generation and application of river network analogues for use in ecology and evolution. Ecology and Evolution, 10(14), 7537-7550. doi:10.1002/ece3.6479, Institutional Repository
Carraro, L., Toffolon, M., Rinaldo, A., & Bertuzzo, E. (2020). SESTET: a spatially‐explicit stream temperature model based on equilibrium temperature. Hydrological Processes, 34, 355-369. doi:10.1002/hyp.13591, Institutional Repository
Chanut, P. C. M., Siebers, A. R., & Robinson, C. T. (2020). Flood disturbance affects macroinvertebrate food chain length in an alluvial river floodplain. Freshwater Biology, 65(3), 490-501. doi:10.1111/fwb.13445, Institutional Repository
Coats, D. W., Choi, J., Jung, J. H., Kim, Y. O., Lu, Y., & Nielsen, L. T. (2020). Mixotrophic scrippsielloid dinoflagellates prey on tintinnid ciliates. Aquatic Ecosystem Health and Management, 23(1), 69-78. doi:10.1080/14634988.2020.1727275, Institutional Repository
Dennis, A. B., Ballesteros, G. I., Robin, S., Schrader, L., Bast, J., Berghöfer, J., … Gadau, J. (2020). Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. BMC Genomics, 21(1), 376 (27 pp.). doi:10.1186/s12864-020-6764-0, Institutional Repository
Dünner, R. P. (2020). Parasite ping pong - host-parasite coevolution, metapopulation structure and genetic diversity (Doctoral dissertation). doi:10.3929/ethz-b-000443380, Institutional Repository
Erős, T., Comte, L., Filipe, A. F., Ruhi, A., Tedesco, P. A., Brose, U., … Olden, J. D. (2020). Effects of nonnative species on the stability of riverine fish communities. Ecography, 43(8), 1156-1166. doi:10.1111/ecog.04985, Institutional Repository
Felmy, A., Weissert, N., Travis, J., & Jokela, J. (2020). Mate availability determines use of alternative reproductive phenotypes in hermaphrodites. Behavioral Ecology, 31(4), 1003-1016. doi:10.1093/beheco/araa046, Institutional Repository
Gatto, M., Bertuzzo, E., Mari, L., Miccoli, S., Carraro, L., Casagrandi, R., & Rinaldo, A. (2020). Spread and dynamics of the COVID-19 epidemic in Italy: effects of emergency containment measures. Proceedings of the National Academy of Sciences of the United States of America PNAS, 117(19), 10484-10491. doi:10.1073/pnas.2004978117, Institutional Repository
Gilarranz, L. J. (2020). Generic emergence of modularity in spatial networks. Scientific Reports, 10(1), 8708 (8 pp.). doi:10.1038/s41598-020-65669-8, Institutional Repository
Gounand, I., Little, C. J., Harvey, E., & Altermatt, F. (2020). Global quantitative synthesis of ecosystem functioning across climatic zones and ecosystem types. Global Ecology and Biogeography, 29(7), 1139-1176. doi:10.1111/geb.13093, Institutional Repository
Guntern, J., Eichler, A., Hagedorn, F., Pellissier, L., Schwikowski, M., Seehausen, O., … Altermatt, F. (2020). Übermässige Stickstoff- und Phosphoreinträge schädigen Biodiversität, Wald und Gewässer. Swiss Academies factsheets: Vol. 15/8. doi:10.5281/zenodo.4269631, Institutional Repository
Hafer-Hahmann, N., & Vorburger, C. (2020). Parasitoids as drivers of symbiont diversity in an insect host. Ecology Letters, 23(8), 1232-1241. doi:10.1111/ele.13526, Institutional Repository
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