Abteilung Aquatische Ökologie



Alther, R., Bongni, N., Borko, Š., Fišer, C., & Altermatt, F. (2021). Citizen science approach reveals groundwater fauna in Switzerland and a new species of Niphargus (Amphipoda, Niphargidae). Subterranean Biology, 39, 1-31. doi:10.3897/subtbiol.39.66755, Institutional Repository
Alther, R., & Altermatt, F. (2021). Die unterirdische Flohkrebsfauna der Schweiz. La faune souterraine d'amphipodes de Suisse. Stalactite, 71(1), 72-81. , Institutional Repository
Alther, R., Fronhofer, E. A., & Altermatt, F. (2021). Dispersal behaviour and riverine network connectivity shape the genetic diversity of freshwater amphipod metapopulations. Molecular Ecology, 30, 6551-6565. doi:10.1111/mec.16201, Institutional Repository
Blackman, R. C., Osathanunkul, M., Brantschen, J., Di Muri, C., Harper, L. R., Mächler, E., … Altermatt, F. (2021). Mapping biodiversity hotspots of fish communities in subtropical streams through environmental DNA. Scientific Reports, 11, 10375 (11 pp.). doi:10.1038/s41598-021-89942-6, Institutional Repository
Blackman, R. C., Altermatt, F., Foulquier, A., Lefébure, T., Gauthier, M., Bouchez, A., … Datry, T. (2021). Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment, 19(10), 574-583. doi:10.1002/fee.2404, Institutional Repository
Brantschen, J., Blackman, R. C., Walser, J. C., & Altermatt, F. (2021). Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment. PLoS One, 16(9), e0257510 (19 pp.). doi:10.1371/journal.pone.0257510, Institutional Repository
Briscoe, A. G., Nichols, S., Hartikainen, H., Knipe, H., Foster, R., Green, A. J., … Bass, D. (2021). High-throughput sequencing of faeces provides evidence for dispersal of parasites and pathogens by migratory waterbirds. Molecular Ecology Resources, 22(4), 1303-1318. doi:10.1111/1755-0998.13548, Institutional Repository
Buser, C. C., Jokela, J., & Martin, O. Y. (2021). Scent of a killer: how could killer yeast boost its dispersal?. Ecology and Evolution, 11(11), 5809-5814. doi:10.1002/ece3.7534, Institutional Repository
Carraro, L., Stauffer, J. B., & Altermatt, F. (2021). How to design optimal eDNA sampling strategies for biomonitoring in river networks. Environmental DNA, 3(1), 157-172. doi:10.1002/edn3.137, Institutional Repository
Chalifour, A., Walser, J. C., Pomati, F., & Fenner, K. (2021). Temperature, phytoplankton density and bacteria diversity drive the biotransformation of micropollutants in a lake ecosystem. Water Research, 202, 117412 (10 pp.). doi:10.1016/j.watres.2021.117412, Institutional Repository
Clark, A. T., Arnoldi, J. F., Zelnik, Y. R., Barabas, G., Hodapp, D., Karakoç, C., … Harpole, S. (2021). General statistical scaling laws for stability in ecological systems. Ecology Letters, 24, 1474-1486. doi:10.1111/ele.13760, Institutional Repository
Comte, L., Carvajal-Quintero, J., Tedesco, P. A., Giam, X., Brose, U., Erős, T., … Olden, J. D. (2021). RivFishTIME: a global database of fish time-series to study global change ecology in riverine systems. Global Ecology and Biogeography, 30(1), 38-50. doi:10.1111/geb.13210, Institutional Repository
Consoli, G., Lepori, F., Robinson, C. T., & Bruder, A. (2021). Predicting macroinvertebrate responses to water abstraction in alpine streams. Water, 13(15), 2121 (22 pp.). doi:10.3390/w13152121, Institutional Repository
Des Roches, S., Brans, K. I., Lambert, M. R., Rivkin, L. R., Savage, A. M., Schell, C. J., … Alberti, M. (2021). Socio-eco-evolutionary dynamics in cities. Evolutionary Applications, 14(1), 248-267. doi:10.1111/eva.13065, Institutional Repository
Doering, M., Freimann, R., Antenen, N., Roschi, A., Robinson, C. T., Rezzonico, F., … Tonolla, D. (2021). Microbial communities in floodplain ecosystems in relation to altered flow regimes and experimental flooding. Science of the Total Environment, 788, 147497 (13 pp.). doi:10.1016/j.scitotenv.2021.147497, Institutional Repository
Donis, D., Mantzouki, E., McGinnis, D. F., Vachon, D., Gallego, I., Grossart, H. P., … Ibelings, B. W. (2021). Stratification strength and light climate explain variation in chlorophyll a at the continental scale in a European multilake survey in a heatwave summer. Limnology and Oceanography, 66(12), 4314-4333. doi:10.1002/lno.11963, Institutional Repository
D’Alelio, D., Russo, L., Hay Mele, B., & Pomati, F. (2021). Intersecting ecosystem services across the aquatic continuum: from global change impacts to local, and biologically driven, synergies and trade-offs. Frontiers in Ecology and Evolution, 9, 628658 (9 pp.). doi:10.3389/fevo.2021.628658, Institutional Repository
Ehrenfels, B., Bartosiewicz, M., Mbonde, A. S., Baumann, K. B. L., Dinkel, C., Junker, J., … Wehrli, B. (2021). Diazotrophic cyanobacteria are associated with a low nitrate resupply to surface waters in Lake Tanganyika. Frontiers in Environmental Science, 9, 716765 (16 pp.). doi:10.3389/fenvs.2021.716765, Institutional Repository
Excofffier, L., Marchi, N., Marques, D. A., Matthey-Doret, R., Gouy, A., & Sousa, V. C. (2021). fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics, 37(24), 4882-4885. doi:10.1093/bioinformatics/btab468, Institutional Repository
Fontana, S., Rasmann, S., de Bello, F., Pomati, F., & Moretti, M. (2021). Reconciling trait based perspectives along a trait-integration continuum. Ecology, 102(10), e03472 (10 pp.). doi:10.1002/ecy.3472, Institutional Repository
Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J. M., … Drezen, J. M. (2021). Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology, 4(1), 104 (15 pp.). doi:10.1038/s42003-020-01623-8, Institutional Repository
Giacomuzzo, E., & Jordán, F. (2021). Food web aggregation: effects on key positions. Oikos, 130(12), 2170-2181. doi:10.1111/oik.08541, Institutional Repository
Gimmi, E., & Vorburger, C. (2021). Strong genotype-by-genotype interactions between aphid-defensive symbionts and parasitoids persist across different biotic environments. Journal of Evolutionary Biology, 34(12), 1944-1953. doi:10.1111/jeb.13953, Institutional Repository
Govaert, L., Gilarranz, L. J., & Altermatt, F. (2021). Competition alters species' plastic and genetic response to environmental change. Scientific Reports, 11, 23518 (14 pp.). doi:10.1038/s41598-021-02841-8, Institutional Repository
Govaert, L., De Meester, L., Spaak, P., & Hairston Jr., N. G. (2021). Eco-evolutionary dynamics in freshwater systems. In T. Mehner & K. Tockner (Eds.), Vol. 1. Encyclopedia of inland waters (pp. 302-316). doi:10.1016/B978-0-12-819166-8.00028-1, Institutional Repository
Govaert, L., Altermatt, F., De Meester, L., Leibold, M. A., McPeek, M. A., Pantel, J. H., & Urban, M. C. (2021). Integrating fundamental processes to understand eco-evolutionary community dynamics and patterns. Functional Ecology, 35(10), 2138-2155. doi:10.1111/1365-2435.13880, Institutional Repository
Govaert, L., De Meester, L., Rousseaux, S., Declerck, S. A. J., & Pantel, J. H. (2021). Measuring the contribution of evolution to community trait structure in freshwater zooplankton. Oikos, 130(10), 1773-1787. doi:10.1111/oik.07885, Institutional Repository
Gómez-Gener, L., Siebers, A. R., Arce, M. I., Arnon, S., Bernal, S., Bolpagni, R., … Zoppini, A. (2021). Towards an improved understanding of biogeochemical processes across surface-groundwater interactions in intermittent rivers and ephemeral streams. Earth-Science Reviews, 220, 103724 (17 pp.). doi:10.1016/j.earscirev.2021.103724, Institutional Repository
Hafer-Hahmann, N., & Vorburger, C. (2021). Positive association between the diversity of symbionts and parasitoids of aphids in field populations. Ecosphere, 12(1), e03355 (11 pp.). doi:10.1002/ecs2.3355, Institutional Repository
Harper, L. R., Lawson Handley, L., Sayer, C. D., Read, D. S., Benucci, M., Blackman, R. C., … Hänfling, B. (2021). Assessing the impact of the threatened crucian carp (Carassius carassius) on pond invertebrate diversity: A comparison of conventional and molecular tools. Molecular Ecology, 30, 3252-3269. doi:10.1111/mec.15670, Institutional Repository
Hertaeg, C., Risse, M., Vorburger, C., De Moraes, C. M., & Mescher, M. C. (2021). Aphids harbouring different endosymbionts exhibit differences in cuticular hydrocarbon profiles that can be recognized by ant mutualists. Scientific Reports, 11, 19559 (10 pp.). doi:10.1038/s41598-021-98098-2, Institutional Repository
Horváthová, T., Šustr, V., Chroňáková, A., Semanová, S., Lang, K., Dietrich, C., … Šimek, M. (2021). Methanogenesis in the digestive tracts of the tropical millipedes Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae). Applied and Environmental Microbiology, 87(15), e00614-21 (13 pp.). doi:10.1128/AEM.00614-21, Institutional Repository
Hrycik, A. R., Isles, P. D. F., Adrian, R., Albright, M., Bacon, L. C., Berger, S. A., … Pierson, D. C. (2021). Earlier winter/spring runoff and snowmelt during warmer winters lead to lower summer chlorophyll-a in north temperate lakes. Global Change Biology, 27(19), 4615-4629. doi:10.1111/gcb.15797, Institutional Repository
Hudson, C. M., Lucek, K., Marques, D. A., Alexander, T. J., Moosmann, M., Spaak, P., … Matthews, B. (2021). Threespine stickleback in Lake Constance: the ecology and genomic substrate of a recent invasion. Frontiers in Ecology and Evolution, 8, 611672 (22 pp.). doi:10.3389/fevo.2020.611672, Institutional Repository
Isles, P. D. F., & Pomati, F. (2021). An operational framework for defining and forecasting phytoplankton blooms. Frontiers in Ecology and the Environment, 19(8), 443-450. doi:10.1002/fee.2376, Institutional Repository
Isles, P. D. F., Creed, I. F., Jonsson, A., & Bergström, A. K. (2021). Trade-offs between light and nutrient availability across gradients of dissolved organic carbon lead to spatially and temporally variable responses of lake phytoplankton biomass to browning. Ecosystems, 24, 1837-1852. doi:10.1007/s10021-021-00619-7, Institutional Repository
Jähnig, S. C., Baranov, V., Altermatt, F., Cranston, P., Friedrichs-Manthey, M., Geist, J., … Domisch, S. (2021). Revisiting global trends in freshwater insect biodiversity. Wiley Interdisciplinary Reviews: Water, 8(2), e1506 (5 pp.). doi:10.1002/wat2.1506, Institutional Repository
Kaech, H., & Vorburger, C. (2021). Horizontal transmission of the heritable protective endosymbiont Hamiltonella defensa depends on titre and haplotype. Frontiers in Microbiology, 11, 628755 (10 pp.). doi:10.3389/fmicb.2020.628755, Institutional Repository
Kaech, H., Dennis, A. B., & Vorburger, C. (2021). Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa. BMC Genomics, 22, 449 (21 pp.). doi:10.1186/s12864-021-07742-8, Institutional Repository
Kakouei, K., Kraemer, B. M., Anneville, O., Carvalho, L., Feuchtmayr, H., Graham, J. L., … Adrian, R. (2021). Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections. Global Change Biology, 27(24), 6409-6422. doi:10.1111/gcb.15866, Institutional Repository
Kowarik, C., Martin-Creuzburg, D., & Robinson, C. T. (2021). Cross-ecosystem linkages: transfer of polyunsaturated fatty acids from streams to riparian spiders via emergent insects. Frontiers in Ecology and Evolution, 9, 707570 (20 pp.). doi:10.3389/fevo.2021.707570, Institutional Repository
Kyathanahally, S. P., Hardeman, T., Merz, E., Bulas, T., Reyes, M., Isles, P., … Baity-Jesi, M. (2021). Deep learning classification of Lake Zooplankton. Frontiers in Microbiology, 12, 746297 (13 pp.). doi:10.3389/fmicb.2021.746297, Institutional Repository
Lafuente, E., Lürig, M. D., Rövekamp, M., Matthews, B., Buser, C., Vorburger, C., & Räsänen, K. (2021). Building on 150 years of knowledge: the freshwater isopod Asellus aquaticus as an integrative eco-evolutionary model system. Frontiers in Ecology and Evolution, 9, 748212 (23 pp.). doi:10.3389/fevo.2021.748212, Institutional Repository
Lafuente, E., Alves, F., King, J. G., Peralta, C. M., & Beldade, P. (2021). Many ways to make darker flies: intra- and interspecific variation in Drosophila body pigmentation components. Ecology and Evolution, 11(12), 8136-8155. doi:10.1002/ece3.7646, Institutional Repository
Larsen, S., Comte, L., Filipa Filipe, A., Fortin, M. J., Jacquet, C., Ryser, R., … Olden, J. D. (2021). The geography of metapopulation synchrony in dendritic river networks. Ecology Letters, 24(4), 791-801. doi:10.1111/ele.13699, Institutional Repository
Lau, D. C. P., Jonsson, A., Isles, P. D. F., Creed, I. F., & Bergström, A. ‑K. (2021). Lowered nutritional quality of plankton caused by global environmental changes. Global Change Biology, 27(23), 6294-6306. doi:10.1111/gcb.15887, Institutional Repository
Li, F., Zhang, Y., Altermatt, F., & Zhang, X. (2021). Consideration of multitrophic biodiversity and ecosystem functions improves indices on river ecological status. Environmental Science and Technology, 55(24), 16434 (11 pp.)-16444. doi:10.1021/acs.est.1c05899, Institutional Repository
Lürig, M. D., & Matthews, B. (2021). Dietary-based developmental plasticity affects juvenile survival in an aquatic detritivore. Proceedings of the Royal Society B: Biological Sciences, 288(1945), 20203136 (10 pp.). doi:10.1098/rspb.2020.3136, Institutional Repository
Lürig, M. D., Narwani, A., Penson, H., Wehrli, B., Spaak, P., & Matthews, B. (2021). Non‐additive effects of foundation species determine the response of aquatic ecosystems to nutrient perturbation. Ecology, 102(7), e03371 (14 pp.). doi:10.1002/ecy.3371, Institutional Repository
Lürig, M. D., Best, R. J., Dakos, V., & Matthews, B. (2021). Submerged macrophytes affect the temporal variability of aquatic ecosystems. Freshwater Biology, 66(3), 421-435. doi:10.1111/fwb.13648, Institutional Repository
Mathers, K. L., Robinson, C. T., & Weber, C. (2021). Artificial flood reduces fine sediment clogging enhancing hyporheic zone physicochemistry and accessibility for macroinvertebrates. Ecological Solutions and Evidence, 2(4), e12103 (14 pp.). doi:10.1002/2688-8319.12103, Institutional Repository
Mathers, K. L., Kowarik, C., Rachelly, C., Robinson, C. T., & Weber, C. (2021). The effects of sediment traps on instream habitat and macroinvertebrates of mountain streams. Journal of Environmental Management, 295, 113066 (11 pp.). doi:10.1016/j.jenvman.2021.113066, Institutional Repository
Mausbach, J. (2021). The integrative phenotype of moor frogs (Rana arvalis) - evolutionary physiology and adaptation to multidimensional selection (Doctoral dissertation). doi:10.3929/ethz-b-000499670, Institutional Repository
Merz, E., Kozakiewicz, T., Reyes, M., Ebi, C., Isles, P., Baity-Jesi, M., … Pomati, F. (2021). Underwater dual-magnification imaging for automated lake plankton monitoring. Water Research, 203, 117524 (12 pp.). doi:10.1016/j.watres.2021.117524, Institutional Repository
Meyer, M. F., Ladwig, R., Dugan, H. A., Anderson, A., Bah, A. R., Boehrer, B., … Weathers, K. C. (2021). Virtual growing pains: initial lessons learned from organizing virtual workshops, summits, conferences, and networking events during a global pandemic. Limnology and Oceanography Bulletin, 30(1), 1-11. doi:10.1002/lob.10431, Institutional Repository
Moerman, F. E. (2021). Understanding invasions - from the genetic basis to the ecological dynamics of spreading populations (Doctoral dissertation). Universität Zürich, Zürich, 388 p. , Institutional Repository
Monchamp, M. È., Bruel, R., Frossard, V., McGowan, S., Lavrieux, M., Muschick, M., … Dubois, N. (2021). Paleoecological evidence for a multi-trophic regime shift in a perialpine lake (Lake Joux, Switzerland). Anthropocene, 35, 100301 (13 pp.). doi:10.1016/j.ancene.2021.100301, Institutional Repository
Moor, H., Gossner, M. M., Graham, C., Hobi, M. L., Holderegger, R., Reber, U., … Shipley, R. (2021). Biodiversitätsschutz dank Ökosystem-übergreifendem Denken. Forschungsinitiative Blau-Grüne Biodiversität (BGB). Aqua & Gas, 101(12), 44-49. , Institutional Repository
Moza, M. I., Postolache, C., Benedek, A. M., Moldoveanu, M., & Spaak, P. (2021). Geographical and temporal patterns of cyanobacterial assemblages in the Danube Delta lake complexes. Hydrobiologia, 848, 753-771. doi:10.1007/s10750-020-04466-w, Institutional Repository
Mächler, E., Walser, J. C., & Altermatt, F. (2021). Decision-making and best practices for taxonomy-free environmental DNA metabarcoding in biomonitoring using Hill numbers. Molecular Ecology, 30(13), 3326-3339. doi:10.1111/mec.15725, Institutional Repository
Mächler, E., Salyani, A., Walser, J. C., Larsen, A., Schaefli, B., Altermatt, F., & Ceperley, N. (2021). Environmental DNA simultaneously informs hydrological and biodiversity characterization of an Alpine catchment. Hydrology and Earth System Sciences, 25(2), 735-753. doi:10.5194/hess-25-735-2021, Institutional Repository
Nickel, J., Schell, T., Holtzem, T., Thielsch, A., Dennis, S. R., Schlick-Steiner, B. C., … Cordellier, M. (2021). Hybridization dynamics and extensive introgression in the Daphnia longispina species complex: new insights from a high-quality Daphnia galeata reference genome. Genome Biology and Evolution, 13(12), evab267 (23 pp.). doi:10.1093/gbe/evab267, Institutional Repository
Obrecht, A., Pham-Truffert, M., Spehn, E., Payne, D., de Bremond, A., Altermatt, F., … Geschke, J. (2021). Achieving the SDGs with biodiversity. Swiss Academies factsheets: Vol. 16/1. doi:10.5281/zenodo.4457298, Institutional Repository
Obrecht, A., Pham-Truffert, M., Spehn, E., Payne, D., de Bremond, A., Altermatt, F., … Geschke, J. (2021). Mit Biodiversiät die SDGs erreichen. Swiss Academies factsheets: Vol. 16/1. doi:10.5281/zenodo.4457329, Institutional Repository
Packman, A. I., Robinson, C. T., & Lamouroux, N. (2021). Hydraulic drivers of populations, communities and ecosystem processes. Journal of Ecohydraulics, 6(2), 91-94. doi:10.1080/24705357.2021.1951506, Institutional Repository
Pawlowski, J., Apothéloz-Perret-Gentil, L., & Altermatt, F. (2021). Environmental versus extra-organismal DNA. Molecular Ecology, 30(19), 4606-4607. doi:10.1111/mec.16144, Institutional Repository
Pilla, R. M., Mette, E. M., Williamson, C. E., Adamovich, B. V., Adrian, R., Anneville, O., … Zhukova, T. V. (2021). Global data set of long-term summertime vertical temperature profiles in 153 lakes. Scientific Data, 8, 200 (12 pp.). doi:10.1038/s41597-021-00983-y, Institutional Repository
Polanco F., A., Richards, E., Flück, B., Valentini, A., Altermatt, F., Brosse, S., … Pellissier, L. (2021). Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems. Environmental DNA, 3(6), 1113-1127. doi:10.1002/edn3.232, Institutional Repository
Pérez-Burillo, J., Trobajo, R., Leira, M., Keck, F., Rimet, F., Sigró, J., & Mann, D. G. (2021). DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species. Science of the Total Environment, 798, 149029 (17 pp.). doi:10.1016/j.scitotenv.2021.149029, Institutional Repository
Reinl, K. L., Brookes, J. D., Carey, C. C., Harris, T. D., Ibelings, B. W., Morales-Williams, A. M., … Zhan, Q. (2021). Cyanobacterial blooms in oligotrophic lakes: shifting the high-nutrient paradigm. Freshwater Biology, 66(9), 1846-1859. doi:10.1111/fwb.13791, Institutional Repository
Seppälä, O., Çetin, C., Cereghetti, T., Feulner, P. G. D., & Adema, C. M. (2021). Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of 'omics'. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1825), 20200158 (9 pp.). doi:10.1098/rstb.2020.0158, Institutional Repository
Seppälä, O., Walser, J. C., Cereghetti, T., Seppälä, K., Salo, T., & Adema, C. M. (2021). Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research. BMC Genomics, 22(1), 144 (16 pp.). doi:10.1186/s12864-021-07428-1, Institutional Repository
Sertić Perić, M., Nielsen, J. M., Schubert, C. J., & Robinson, C. T. (2021). Does rapid glacial recession affect feeding habits of alpine stream insects?. Freshwater Biology, 66(1), 114-129. doi:10.1111/fwb.13621, Institutional Repository
Siebers, A. R., Paillex, A., & Robinson, C. T. (2021). Riparian hunting spiders do not rely on aquatic subsidies from intermittent alpine streams. Aquatic Sciences, 83(2), 25 (11 pp.). doi:10.1007/s00027-021-00779-7, Institutional Repository
Stibor, H., Hairston Jr., N., Santer, B., Sommer, U., Spaak, P., & Weider, L. J. (2021). Winfried Lampert - international visionary for the aquatic sciences. Limnology and Oceanography Bulletin, 30(3), 107-113. doi:10.1002/lob.10452, Institutional Repository
Stähly, S., Tonolla, D., Franca, M. J., Robinson, C. T., Döring, M., & Schleiss, A. J. (2021). Künstliche Hochwasser in Restwasserstrecken unter Berücksichtigung von Geschiebevorkommen, hydromorphologischer und ökologischer Indikatoren. KW Korrespondenz Wasserwirtschaft, 14(8), 492-502. , Institutional Repository
Taddei, A., Räsänen, K., & Burdon, F. J. (2021). Size-dependent sensitivity of stream amphipods indicates population-level responses to chemical pollution. Freshwater Biology, 66(4), 765-784. doi:10.1111/fwb.13677, Institutional Repository
Thalinger, B., Deiner, K., Harper, L. R., Rees, H. C., Blackman, R. C., Sint, D., … Bruce, K. (2021). A validation scale to determine the readiness of environmental DNA assays for routine species monitoring. Environmental DNA, 3(4), 823-836. doi:10.1002/edn3.189, Institutional Repository
Thalinger, B., Kirschner, D., Pütz, Y., Moritz, C., Schwarzenberger, R., Wanzenböck, J., & Traugott, M. (2021). Lateral and longitudinal fish environmental DNA distribution in dynamic riverine habitats. Environmental DNA, 3(1), 305-318. doi:10.1002/edn3.171, Institutional Repository
Thompson, P., Hürlemann, S., & Altermatt, F. (2021). Species interactions limit the predictability of community responses to environmental change. American Naturalist, 198(6), 695-705. doi:10.1086/716724, Institutional Repository
Twining, C. W., Bernhardt, J. R., Derry, A. M., Hudson, C. M., Ishikawa, A., Kabeya, N., … Matthews, B. (2021). The evolutionary ecology of fatty-acid variation: implications for consumer adaptation and diversification. Ecology Letters, 24(8), 1709-1731. doi:10.1111/ele.13771, Institutional Repository
Ulrich, G. F., Zemp, N., Vorburger, C., & Boulain, H. (2021). Quantitative trait locus analysis of parasitoid counteradaptation to symbiont-conferred resistance. Heredity, 127(2), 219-232. doi:10.1038/s41437-021-00444-7, Institutional Repository
Vanvelk, H., Govaert, L., van den Berg, E. M., Brans, K. I., & De Meester, L. (2021). Interspecific differences, plastic, and evolutionary responses to a heat wave in three co-occurring Daphnia species. Limnology and Oceanography, 66(4), 1201-1220. doi:10.1002/lno.11675, Institutional Repository
Vaz, P. G., Merten, E. C., Robinson, C. T., & Pinto, P. (2021). Severely burned wood from wildfires has low functional potential in streams. Journal of Applied Ecology, 58(6), 1346-1356. doi:10.1111/1365-2664.13872, Institutional Repository
Vorburger, C. (2021). Fragile Unterwasserwelt. Ornis, 21(2), 6-11. , Institutional Repository
Widmer, I., Mühlethaler, R., Baur, B., Gonseth, Y., Guntern, J., Klaus, G., … Altermatt, F. (2021). Diversité des insectes en Suisse. Importance, tendances, actions possibles (Swiss Academies reports, Report No.: 16/9). doi:10.5281/zenodo.5144800, Institutional Repository
Widmer, I., Mühlethaler, R., Baur, B., Gonseth, Y., Guntern, J., Klaus, G., … Altermatt, F. (2021). Diversité des insectes en Suisse. Importance, tendances, actions possibles. Swiss Academies factsheets: Vol. 16/4. doi:10.5281/zenodo.5520658, Institutional Repository
Widmer, I., Mühlethaler, R., Baur, B., Gonseth, Y., Guntern, J., Klaus, G., … Altermatt, F. (2021). Insektenvielfalt in der Schweiz. Bedeutung, Trends, Handlungsoptionen (Swiss Academies reports, Report No.: 16/9). doi:10.5281/zenodo.5144739, Institutional Repository
Widmer, I., Mühlethaler, R., Baur, B., Gonseth, Y., Guntern, J., Klaus, G., … Altermatt, F. (2021). Insektenvielfalt in der Schweiz. Bedeutung, Trends, Handlungsoptionen. Swiss Academies factsheets: Vol. 16/4. doi:10.5281/zenodo.5520541, Institutional Repository
Zajac, N., Zoller, S., Seppälä, K., Moi, D., Dessimoz, C., Jokela, J., … Glover, N. (2021). Gene duplication and gain in the trematode Atriophallophorus winterbourni contributes to adaptation to parasitism. Genome Biology and Evolution, 13(3), evab010 (16 pp.). doi:10.1093/gbe/evab010, Institutional Repository
Zhang, C., Jones, M., Govaert, L., Viant, M., De Meester, L., & Stoks, R. (2021). Resurrecting the metabolome: rapid evolution magnifies the metabolomic plasticity to predation in a natural Daphnia population. Molecular Ecology, 30(10), 2285-2297. doi:10.1111/mec.15886, Institutional Repository


Alberti, M., Palkovacs, E. P., Des Roches, S., De Meester, L., Brans, K. I., Govaert, L., … Verrelli, B. C. (2020). The complexity of urban eco-evolutionary dynamics. BioScience, 70(9), 772-793. doi:10.1093/biosci/biaa079, Institutional Repository
Altermatt, F., Little, C. J., Mächler, E., Wang, S., Zhang, X., & Blackman, R. C. (2020). Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems. Oikos, 129(5), 607-618. doi:10.1111/oik.06806, Institutional Repository
Alther, R., & Weber, R. (2020). "Wir rechnen mit weiteren Entdeckungen". Pro Natura Magazine (1), 7-8. , Institutional Repository
Alther, R., Bongni, N., Borko, Š., Fišer, C., & Altermatt, F. (2020). Reiche Grundwasserfauna. Pilotstudie fördert Artenvielfalt zutage. Aqua & Gas, 100(7/8), 36-42. , Institutional Repository
Archambeault, S. L., Durston, D. J., Wan, A., El‐Sabaawi, R. W., Matthews, B., & Peichel, C. L. (2020). Phosphorus limitation does not drive loss of bony lateral plates in freshwater stickleback (Gasterosteus aculeatus). Evolution, International Journal of Organic Evolution, 74(9), 2088-2104. doi:10.1111/evo.14044, Institutional Repository
Baggio, M., Chavas, J. ‐P., Di Falco, S., Hertig, A., & Pomati, F. (2020). The effect of anthropogenic and environmental factors in coupled human‐natural systems: evidence from Lake Zürich. Natural Resource Modeling, 33, e12245 (28 pp.). doi:10.1111/nrm.12245, Institutional Repository
Beck, S. V., Räsänen, K., Leblanc, C. A., Skúlason, S., Jónsson, Z. O., & Kristjánsson, B. K. (2020). Differences among families in craniofacial shape at early life-stages of Arctic charr (Salvelinus alpinus). BMC Developmental Biology, 20(1), 21 (15 pp.). doi:10.1186/s12861-020-00226-0, Institutional Repository
Bergström, A. K., Jonsson, A., Isles, P. D. F., Creed, I. F., & Lau, D. C. P. (2020). Changes in nutritional quality and nutrient limitation regimes of phytoplankton in response to declining N deposition in mountain lakes. Aquatic Sciences, 82(2), 31 (16 pp.). doi:10.1007/s00027-020-0697-1, Institutional Repository
Bernhard, G. H., Neale, R. E., Barnes, P. W., Neale, P. J., Zepp, R. G., Wilson, S. R., … White, C. C. (2020). Environmental effects of stratospheric ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2019. Photochemical and Photobiological Sciences, 19(5), 542-584. doi:10.1039/d0pp90011g, Institutional Repository
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Blackman, R. C., Bruder, A., Burdon, F. J., Convey, P., Funk, W. C., Jähnig, S. C., … Altermatt, F. (2020). A meeting framework for inclusive and sustainable science. Nature Ecology & Evolution, 4, 668-671. doi:10.1038/s41559-020-1190-x, Institutional Repository
Blackman, R. C., Benucci, M., Donnelly, R. C., Hänfling, B., Harper, L. R., Sellers, G. S., & Lawson Handley, L. (2020). Simple, sensitive and species-specific assays for detecting quagga and zebra mussels (Dreissena rostriformis bugensis and D. polymorpha) using environmental DNA. Management of Biological Invasions, 11(2), 218-236. doi:10.3391/mbi.2020.11.2.04, Institutional Repository
Blackman, R. C., Ling, K. K. S., Harper, L. R., Shum, P., Hänfling, B., & Lawson-Handley, L. (2020). Targeted and passive environmental DNA approaches outperform established methods for detection of quagga mussels, Dreissena rostriformis bugensis in flowing water. Ecology and Evolution, 10(23), 13248-13259. doi:10.1002/ece3.6921, Institutional Repository
Blasco-Costa, I., Seppälä, K., Feijen, F., Zajac, N., Klappert, K., & Jokela, J. (2020). A new species of Atriophallophorus Deblock & Rosé, 1964 (Trematoda: Microphallidae) described from in vitro-grown adults and metacercariae from Potamopyrgus antipodarum (Gray, 1843) (Mollusca: Tateidae). Journal of Helminthology, 94, e108 (15 pp.). doi:10.1017/S0022149X19000993, Institutional Repository
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Lewington-Pearce, L., Parker, B., Narwani, A., Nielsen, J. M., & Kratina, P. (2020). Diversity and temperature indirectly reduce CO2 concentrations in experimental freshwater communities. Oecologia, 192, 515-527. doi:10.1007/s00442-020-04593-0, Institutional Repository
Li, F., Altermatt, F., Yang, J., An, S., Li, A., & Zhang, X. (2020). Human activities' fingerprint on multitrophic biodiversity and ecosystem functions across a major river catchment in China. Global Change Biology, 26(12), 6867-6879. doi:10.1111/gcb.15357, Institutional Repository
Little, C. J., Fronhofer, E. A., & Altermatt, F. (2020). Nonlinear effects of intraspecific competition alter landscape-wide scaling up of ecosystem function. American Naturalist, 195(3), 432-444. doi:10.1086/707018, Institutional Repository
Lu, Y., Ocaña-Pallarès, E., López-Escardó, D., Dennis, S. R., Monaghan, M. T., Ruiz-Trillo, I., … Wolinska, J. (2020). Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes. Molecular Phylogenetics and Evolution, 151, 106891 (8 pp.). doi:10.1016/j.ympev.2020.106891, Institutional Repository
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Mächler, E. (2020). Environmental DNA for rivers: from degradation processes to diversity analysis and monitoring (Doctoral dissertation). Universität Zürich, Zürich, 272 p. , Institutional Repository
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Deplazes-Zemp, A., Abiven, S., Schaber, P., Schaepman, M., Schaepman-Strub, G., Schmid, B., … Altermatt, F. (2018). The Nagoya Protocol could backfire on the Global South. Nature Ecology & Evolution, 2(6), 917-919. doi:10.1038/s41559-018-0561-z, Institutional Repository
Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., … Zettler, M. L. (2018). BioTIME: a database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27(7), 760-786. doi:10.1111/geb.12729, Institutional Repository
Döring, M., Tonolla, D., Robinson, C. T., Schleiss, A., Stähly, S., Gufler, C., … Di Cugno, N. (2018). Künstliches Hochwasser an der Saane – Eine Massnahme zum nachhaltigen Auenmanagement. Wasser, Energie, Luft, 110(2), 119-127. , Institutional Repository
Elo, M., Alahuhta, J., Kanninen, A., Meissner, K. K., Seppälä, K., & Mönkkönen, M. (2018). Environmental characteristics and anthropogenic impact jointly modify aquatic macrophyte species diversity. Frontiers in Plant Science, 9, 1001 (15 pp.). doi:10.3389/fpls.2018.01001, Institutional Repository
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Fišer, C., Robinson, C. T., & Malard, F. (2018). Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology, 27(3), 613-635. doi:10.1111/mec.14486, Institutional Repository
Fišer, C., Alther, R., Zakšek, V., Borko, Š., Fuchs, A., & Altermatt, F. (2018). Translating Niphargus barcodes from Switzerland into taxonomy with a description of two new species (Amphipoda, Niphargidae). ZooKeys, 760, 113-141. doi:10.3897/zookeys.760.24978, Institutional Repository
Fontana, S., Thomas, M. K., Moldoveanu, M., Spaak, P., & Pomati, F. (2018). Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness. ISME Journal, 12, 356-366. doi:10.1038/ismej.2017.160, Institutional Repository
Fronhofer, E. A., Legrand, D., Altermatt, F., Ansart, A., Blanchet, S., Bonte, D., … Cote, J. (2018). Bottom-up and top-down control of dispersal across major organismal groups. Nature Ecology & Evolution, 2(12), 1859-1863. doi:10.1038/s41559-018-0686-0, Institutional Repository
Fronhofer, E. A., Liebig, J., Mitesser, O., & Poethke, H. J. (2018). Eusociality outcompetes egalitarian and solitary strategies when resources are limited and reproduction is costly. Ecology and Evolution, 8(24), 12953-12964. doi:10.1002/ece3.4737, Institutional Repository
Gounand, I., Little, C. J., Harvey, E., & Altermatt, F. (2018). Cross-ecosystem carbon flows connecting ecosystems worldwide. Nature Communications, 9, 4825 (8 pp.). doi:10.1038/s41467-018-07238-2, Institutional Repository
Gounand, I., Harvey, E., Little, C. J., & Altermatt, F. (2018). Meta-Ecosystems 2.0: rooting the theory into the field. Trends in Ecology and Evolution, 33(1), 36-46. doi:10.1016/j.tree.2017.10.006, Institutional Repository
Gounand, I., Harvey, E., Little, C. J., & Altermatt, F. (2018). On embedding meta-ecosystems into a socioecological framework: a reply to Renaud et al.. Trends in Ecology and Evolution, 33(7), 484-486. doi:10.1016/j.tree.2018.04.004, Institutional Repository
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Harper, L. R., Griffiths, N. P., Lawson Handley, L., Sayer, C. D., Read, D. S., Harper, K. J., … Hänfling, B. (2018). Development and application of environmental DNA surveillance for the threatened crucian carp (Carassius carassius). Freshwater Biology, 93-107. doi:10.1111/fwb.13197, Institutional Repository
Harvey, E., Gounand, I., Fronhofer, E. A., & Altermatt, F. (2018). Disturbance reverses classic biodiversity predictions in river-like landscapes. Proceedings of the Royal Society B: Biological Sciences, 285(1893), 20182441 (9 pp.). doi:10.1098/rspb.2018.2441, Institutional Repository
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Holenstein, K. (2018). Species invasion in dendritic riverine ecosystems: the effect of patch size and patch connectivity (Master thesis). 67 p. , Institutional Repository
Huntscha, S., Stravs, M. A., Bühlmann, A., Ahrens, C. H., Frey, J. E., Pomati, F., … Poiger, T. (2018). Seasonal dynamics of glyphosate and AMPA in Lake Greifensee: rapid microbial degradation in the epilimnion during summer. Environmental Science and Technology, 52(8), 4641-4649. doi:10.1021/acs.est.8b00314, Institutional Repository
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Käch, H., Mathé-Hubert, H., Dennis, A. B., & Vorburger, C. (2018). Rapid evolution of symbiont-mediated resistance compromises biological control of aphids by parasitoids. Evolutionary Applications, 11(2), 220-230. doi:10.1111/eva.12532, Institutional Repository
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Lange, K., Meier, P., Trautwein, C., Schmid, M., Robinson, C. T., Weber, C., & Brodersen, J. (2018). Basin-scale effects of small hydropower on biodiversity dynamics. Frontiers in Ecology and the Environment, 16(7), 397-404. doi:10.1002/fee.1823, Institutional Repository
Langeloh, L., & Seppälä, O. (2018). Relative importance of chemical attractiveness to parasites for susceptibility to trematode infection. Ecology and Evolution, 8(17), 8921-8929. doi:10.1002/ece3.4386, Institutional Repository
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Li, F., Peng, Y., Fang, W., Altermatt, F., Xie, Y., Yang, J., & Zhang, X. (2018). Application of environmental DNA metabarcoding for predicting anthropogenic pollution in rivers. Environmental Science and Technology, 52(20), 11708-11719. doi:10.1021/acs.est.8b03869, Institutional Repository
Little, C. J., & Altermatt, F. (2018). Do priority effects outweigh environmental filtering in a guild of dominant freshwater macroinvertebrates?. Proceedings of the Royal Society B: Biological Sciences, 285(1876), 20180205 (9 pp.). doi:10.1098/rspb.2018.0205, Institutional Repository
Little, C. J., & Altermatt, F. (2018). Landscape configuration alters spatial arrangement of terrestrial-aquatic subsidies in headwater streams. Landscape Ecology, 33(9), 1519-1531. doi:10.1007/s10980-018-0678-0, Institutional Repository
Little, C. J., & Altermatt, F. (2018). Species turnover and invasion of dominant freshwater invertebrates alter biodiversity-ecosystem-function relationship. Ecological Monographs, 88(3), 461-480. doi:10.1002/ecm.1299, Institutional Repository
Lu, Y., Johnston, P. R., Dennis, S. R., Monaghan, M. T., John, U., Spaak, P., & Wolinska, J. (2018). Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism. BMC Genomics, 19, 932 (10 pp.). doi:10.1186/s12864-018-5312-7, Institutional Repository
Martin, B. C., Gleeson, D., Statton, J., Siebers, A. R., Grierson, P., Ryan, M. H., & Kendrick, G. A. (2018). Low light availability alters root exudation and reduces putative beneficial microorganisms in seagrass roots. Frontiers in Microbiology, 8, 2667 (16 pp.). doi:10.3389/fmicb.2017.02667, Institutional Repository
Martín, E. J., Ryo, M., Doering, M., & Robinson, C. T. (2018). Evaluation of restoration and flow interactions on river structure and function: channel widening of the Thur River, Switzerland. Water, 10(4), 439 (13 pp.). doi:10.3390/w10040439, Institutional Repository
Matthews, B., Best, R. J., Feulner, P. G. D., Narwani, A., & Limberger, R. (2018). Evolution as an ecosystem process: insights from genomics. Genome, 61(4), 298-309. doi:10.1139/gen-2017-0044, Institutional Repository
Melián, C. J., Matthews, B., de Andreazzi, C. S., Rodríguez, J. P., Harmon, L. J., & Fortuna, M. A. (2018). Deciphering the interdependence between ecological and evolutionary networks. Trends in Ecology and Evolution, 33(7), 504-512. doi:10.1016/j.tree.2018.04.009, Institutional Repository
Milani, G., Volpi, M., Tonolla, D., Doering, M., Robinson, C., Kneubühler, M., & Schaepman, M. (2018). Robust quantification of riverine land cover dynamics by high-resolution remote sensing. Remote Sensing of Environment, 217, 491-505. doi:10.1016/j.rse.2018.08.035, Institutional Repository
Monchamp, M. E., Spaak, P., Domaizon, I., Dubois, N., Bouffard, D., & Pomati, F. (2018). Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution, 2, 317-324. doi:10.1038/s41559-017-0407-0, Institutional Repository
Mächler, E., Osathanunkul, M., & Altermatt, F. (2018). Shedding light on eDNA: neither natural levels of UV radiation nor the presence of a filter feeder affect eDNA-based detection of aquatic organisms. PLoS One, 13(4), e0195529 (15 pp.). doi:10.1371/journal.pone.0195529, Institutional Repository
Pawlowski, J., Kelly-Quinn, M., Altermatt, F., Apothéloz-Perret-Gentil, L., Beja, P., Boggero, A., … Kahlert, M. (2018). The future of biotic indices in the ecogenomic era: integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems. Science of the Total Environment, 637-638, 1295-1310. doi:10.1016/j.scitotenv.2018.05.002, Institutional Repository
Pennekamp, F., Pontarp, M., Tabi, A., Altermatt, F., Alther, R., Choffat, Y., … Petchey, O. L. (2018). Biodiversity increases and decreases ecosystem stability. Nature, 563(7729), 109-112. doi:10.1038/s41586-018-0627-8, Institutional Repository
Piccolroaz, S., Toffolon, M., Robinson, C. T., & Siviglia, A. (2018). Exploring and quantifying river thermal response to heatwaves. Water, 10(8), 1098 (18 pp.). doi:10.3390/w10081098, Institutional Repository
Robinson, C. T., Siebers, A. R., & Ortlepp, J. (2018). Long-term ecological responses of the River Spöl to experimental floods. Freshwater Science, 37(3), 433-447. doi:10.1086/699481, Institutional Repository