Department Aquatic Ecology



Artana, C., Capitani, L., Santos Garcia, G., Angelini, R., & Coll, M. (2024). Food web trophic control modulates tropical Atlantic reef ecosystems response to marine heat wave intensity and duration. Journal of Animal Ecology. doi:10.1111/1365-2656.14107, Institutional Repository
Blackman, R., Couton, M., Keck, F., Kirschner, D., Carraro, L., Cereghetti, E., … Altermatt, F. (2024). Environmental DNA: the next chapter. Molecular Ecology, 33(11), e17355 (17 pp.). doi:10.1111/mec.17355, Institutional Repository
Blackman, R. C., Carraro, L., Keck, F., & Altermatt, F. (2024). Measuring the state of aquatic environments using eDNA - Upscaling spatial resolution of biotic indices. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1904), 20230121 (9 pp.). doi:10.1098/rstb.2023.0121, Institutional Repository
Brantschen, J., & Altermatt, F. (2024). Contrasting strengths of eDNA and electrofishing compared to historic records for assessing fish community diversity and composition. Canadian Journal of Fisheries and Aquatic Sciences, 81(2), 178-189. doi:10.1139/cjfas-2023-0053, Institutional Repository
Brantschen, J., Fopp, F., Adde, A., Keck, F., Guisan, A., Pellissier, L., & Altermatt, F. (2024). Habitat suitability models reveal the spatial signal of environmental DNA in riverine networks. Ecography, e07267 (12 pp.). doi:10.1111/ecog.07267, Institutional Repository
Byrnes, J. E. K., Brown, A., Sheridan, K., Peller, T., Lawlor, J., Beaulieu, J., … Benes, K. (2024). Notes from the past show how local variability can stymie urchins and the rise of the reds in the Gulf of Maine. Ecosphere, 15(4), e4800 (11 pp.). doi:10.1002/ecs2.4800, Institutional Repository
Carraro, L., & Altermatt, F. (2024). eDITH: an R-package to spatially project eDNA-based biodiversity across river networks with minimal prior information. Methods in Ecology and Evolution, 15(5), 806-815. doi:10.1111/2041-210X.14317, Institutional Repository
Colls, M., Viza, A., Zufiarre, A., Camacho-Santamans, A., Laini, A., González-Ferreras, A. M., … Romero, F. (2024). Impacts of diffuse urban stressors on stream benthic communities and ecosystem functioning: a review. Limnetica, 43(1), 89-108. doi:10.23818/limn.43.07, Institutional Repository
Daugaard, U., Merkli, S., Merz, E., Pomati, F., & Petchey, O. L. (2024). The dependence of forecasts on sampling frequency as a guide to optimizing monitoring in community ecology. Ecosphere, 15(2), e4786 (14 pp.). doi:10.1002/ecs2.4786, Institutional Repository
Fronhofer, E. A., Govaert, L., O'Connor, M. I., Schreiber, S. J., & Altermatt, F. (2024). The shape of density dependence and the relationship between population growth, intraspecific competition and equilibrium population density. Oikos, 2024(2), e09824 (14 pp.). doi:10.1111/oik.09824, Institutional Repository
Garlovsky, M. D., Whittington, E., Albrecht, T., Arenas-Castro, H., Castillo, D. M., Keais, G. L., … Weber, A. A. T. (2024). Synthesis and scope of the role of postmating prezygotic isolation in speciation. Cold Spring Harbor Perspectives in Biology, a041429 (41 pp.). doi:10.1101/cshperspect.a041429, Institutional Repository
Gimmi, E., Wallisch, J., & Vorburger, C. (2024). Ecological divergence despite common mating sites: genotypes and symbiotypes shed light on cryptic diversity in the black bean aphid species complex. Heredity. doi:10.1038/s41437-024-00687-0, Institutional Repository
Gimmi, E., & Vorburger, C. (2024). High specificity of symbiont-conferred resistance in an aphid-parasitoid field community. Journal of Evolutionary Biology, 37(2), 162-170. doi:10.1093/jeb/voad013, Institutional Repository
Goicolea, T., Adde, A., Broennimann, O., García-Viñas, J. I., Gastón, A., José Aroca-Fernández, M., … G. Mateo, R. (2024). Spatially-nested hierarchical species distribution models to overcome niche truncation in national-scale studies. Ecography. doi:10.1111/ecog.07328, Institutional Repository
Hafer‐Hahmann, N., & Vorburger, C. (2024). Parasitoid species diversity has no effect on protective symbiont diversity in experimental host‐parasitoid populations. Ecology and Evolution, 14(3), e11090 (30 pp.). doi:10.1002/ece3.11090, Institutional Repository
Halstead-Nussloch, G., Signorini, S. G., Giulio, M., Crocetta, F., Munari, M., Della Torre, C., & Weber, A. A. T. (2024). The genome of the rayed Mediterranean limpet Patella caerulea (Linnaeus, 1758). Genome Biology and Evolution, 16(4), evae070 (8 pp.). doi:10.1093/gbe/evae070, Institutional Repository
Haltiner, L., Spaak, P., Dennis, S. R., & Feulner, P. G. D. (2024). Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes. Evolutionary Applications, 17(1), e13620 (16 pp.). doi:10.1111/eva.13620, Institutional Repository
Ho, H. C., & Altermatt, F. (2024). Associating the structure of Lepidoptera-plant interaction networks across clades and life stages to environmental gradients. Journal of Biogeography, 51(4), 725-738. doi:10.1111/jbi.14776, Institutional Repository
Horváthová, T., Lafuente, E., Bartels, J. ‐A., Wallisch, J., & Vorburger, C. (2024). Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus : a role for the microbiome. Environmental Microbiology Reports, 16(3), e13252 (16 pp.). doi:10.1111/1758-2229.13252, Institutional Repository
Hudson, C. M., Stalder, D., & Vorburger, C. (2024). Clines of resistance to parasitoids: the multifarious effects of temperature on defensive symbioses in insects. Current Opinion in Insect Science, 64, 101208 (6 pp.). doi:10.1016/j.cois.2024.101208, Institutional Repository
Ilg, C., & Alther, R. (2024). Ökologischer Zustand von Schweizer Bächen. Die meisten der untersuchten Bäche erfüllen ihre Rolle als Lebensraum für Tiere nur eingeschränkt. Aqua & Gas, 104(4), 46-52. , Institutional Repository
Jeevannavar, A., Narwani, A., Matthews, B., Spaak, P., Brantschen, J., Mächler, E., … Tamminen, M. (2024). Foundation species stabilize an alternative eutrophic state in nutrient-disturbed ponds via selection on microbial community. Frontiers in Microbiology, 15, 1310374 (14 pp.). doi:10.3389/fmicb.2024.1310374, Institutional Repository
Khaliq, I., Chollet Ramampiandra, E., Vorburger, C., Narwani, A., & Schuwirth, N. (2024). The effect of water temperature changes on biological water quality assessment. Ecological Indicators, 159, 111652 (10 pp.). doi:10.1016/j.ecolind.2024.111652, Institutional Repository
Khaliq, I., Rixen, C., Zellweger, F., Graham, C. H., Gossner, M. M., McFadden, I. R., … Narwani, A. (2024). Warming underpins community turnover in temperate freshwater and terrestrial communities. Nature Communications, 15, 1921 (9 pp.). doi:10.1038/s41467-024-46282-z, Institutional Repository
Külling, N., Adde, A., Lambiel, A., Wicki, S., Guisan, A., Grêt-Regamey, A., & Lehmann, A. (2024). Nature's contributions to people and biodiversity mapping in Switzerland: spatial patterns and environmental drivers. Ecological Indicators, 163, 112079 (15 pp.). doi:10.1016/j.ecolind.2024.112079, Institutional Repository
Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P. L., … Guisan, A. (2024). SWECO25: a cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), 21 (7 pp.). doi:10.1038/s41597-023-02899-1, Institutional Repository
Mammola, S., Altermatt, F., Alther, R., Amorim, I. R., Băncilă, R. I., Borges, P. A. V., … Malard, F. (2024). Perspectives and pitfalls in preserving subterranean biodiversity through protected areas. npj Biodiversity, 3, 2 (9 pp.). doi:10.1038/s44185-023-00035-1, Institutional Repository
Mayor, S., Allan, E., Altermatt, F., Isbell, F., Schaepman, M. E., Schmid, B., & Niklaus, P. A. (2024). Diversity–functioning relationships across hierarchies of biological organization. Oikos, 2024(1), e10225 (13 PP.). doi:10.1111/oik.10225, Institutional Repository
Moor, H., Bergamini, A., Vorburger, C., Holderegger, R., Bühler, C., Bircher, N., & Schmidt, B. R. (2024). Building pondscapes for amphibian metapopulations. Conservation Biology, e14165 (16 pp.). doi:10.1111/cobi.14281, Institutional Repository
Moosmann, M., Greenway, R., Oester, R., & Matthews, B. (2024). The role of fish predators and their foraging traits in shaping zooplankton community structure. Ecology Letters, 27(2), e14382 (13 pp.). doi:10.1111/ele.14382, Institutional Repository
Peller, T., & Altermatt, F. (2024). Invasive species drive cross-ecosystem effects worldwide. Nature Ecology & Evolution. doi:10.1038/s41559-024-02380-1, Institutional Repository
Perrelet, K., Moretti, M., Dietzel, A., Altermatt, F., & Cook, L. M. (2024). Engineering blue-green infrastructure for and with biodiversity in cities. npj Urban Sustainability, 4(1), 27. doi:10.1038/s42949-024-00163-y, Institutional Repository
Perry, W. B., Seymour, M., Orsini, L., Jâms, I. B., Milner, N., Edwards, F., … Creer, S. (2024). An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding. Nature Communications, 15(1), 4372. doi:10.1038/s41467-024-48640-3, Institutional Repository
Saccò, M., Mammola, S., Altermatt, F., Alther, R., Bolpagni, R., Brancelj, A., … Reinecke, R. (2024). Groundwater is a hidden global keystone ecosystem. Global Change Biology, 30(1), e17066 (20 pp.). doi:10.1111/gcb.17066, Institutional Repository
Schillé, L., Valdés-Correcher, E., Archaux, F., Bălăcenoiu, F., Bjørn, M. C., Bogdziewicz, M., … Castagneyrol, B. (2024). Decomposing drivers in avian insectivory: large-scale effects of climate, habitat and bird diversity. Journal of Biogeography, 51(6), 1079-1094. doi:10.1111/jbi.14808, Institutional Repository
Schneider, A. S., Knüsel, M., Alther, R., & Altermatt, F. (2024). Grundwasserbiodiversität: Makroinvertebraten in Schweizer Grundwasserökosystemen - Vorkommen, Vielfalt und Biomasse. Aqua & Gas, 104(3), 16-21. , Institutional Repository
Shovon, T. A., Auge, H., Haase, J., & Nock, C. A. (2024). Positive effects of tree species diversity on productivity switch to negative after severe drought mortality in a temperate forest experiment. Global Change Biology, 30(3), e17252 (14 pp.). doi:10.1111/gcb.17252, Institutional Repository
Sieber, N., King, A., Krieg, R., Zenker, A., Vorburger, C., & Hartikainen, H. (2024). Large‐scale eDNA monitoring of multiple aquatic pathogens as a tool to provide risk maps for wildlife diseases. Environmental DNA, 6(1), e427 (14 pp.). doi:10.1002/edn3.427, Institutional Repository
Sinclair, J. S., Welti, E. A. R., Altermatt, F., Álvarez-Cabria, M., Aroviita, J., Baker, N. J., … Haase, P. (2024). Multi-decadal improvements in the ecological quality of European rivers are not consistently reflected in biodiversity metrics. Nature Ecology & Evolution, 8, 430-441. doi:10.1038/s41559-023-02305-4, Institutional Repository
Spaak, P., Alexander, J., Baehni, L., Burlakova, L. E., Dennis, S. R., Feulner, P. G. D., … Stöckli, R. (2024). Voralpine Seen und Trinkwasserversorgung durch Muscheln bedroht. Wasserwirtschaft Wassertechnik wwt, 3, 73-79. , Institutional Repository
Stoffers, T., Altermatt, F., Baldan, D., Bilous, O., Borgwardt, F., Buijse, A. D., … Hein, T. (2024). Reviving Europe's rivers: seven challenges in the implementation of the Nature Restoration Law to restore free‐flowing rivers. Wiley Interdisciplinary Reviews: Water, e1717 (23 pp.). doi:10.1002/wat2.1717, Institutional Repository
Talluto, M., del Campo, R., Estévez, E., Altermatt, F., Datry, T., & Singer, G. (2024). Towards (better) fluvial meta-ecosystem ecology: a research perspective. npj Biodiversity, 3, 3 (10 pp.). doi:10.1038/s44185-023-00036-0, Institutional Repository
Thomas, P. K., Jacob, M., Acevedo-Trejos, E., Hillebrand, H., & Striebel, M. (2024). Species richness and intraspecific variation interactively shape marine diatom community functioning. Limnology and Oceanography Letters. doi:10.1002/lol2.10398, Institutional Repository
Tiegs, S. D., Capps, K. A., Costello, D. M., Schmidt, J. P., Patrick, C. J., Follstad Shah, J. J., … Zwart, J. A. (2024). Human activities shape global patterns of decomposition rates in rivers. Science, 384(6701), 1191-1195. doi:10.1126/science.adn1262, Institutional Repository
To, S. W., Acevedo-Trejos, E., Chakraborty, S., Pomati, F., & Merico, A. (2024). Grazing strategies determine the size composition of phytoplankton in eutrophic lakes. Limnology and Oceanography, 69(4), 933-946. doi:10.1002/lno.12538, Institutional Repository
Van de Schoot, E., Merckx, T., Ebert, D., Wesselingh, R. A., Altermatt, F., & Van Dyck, H. (2024). Evolutionary change in flight-to-light response in urban moths comes with changes in wing morphology. Biology Letters, 20(3), 20230486 (7 pp.). doi:10.1098/rsbl.2023.0486, Institutional Repository
Zheng, L., Barry, K. E., Guerrero-Ramírez, N. R., Craven, D., Reich, P. B., Verheyen, K., … Hautier, Y. (2024). Effects of plant diversity on productivity strengthen over time due to trait-dependent shifts in species overyielding. Nature Communications, 15, 2078 (14 pp.). doi:10.1038/s41467-024-46355-z, Institutional Repository
Zong, S., Brantschen, J., Zhang, X., Albouy, C., Valentini, A., Zhang, H., … Pellissier, L. (2024). Combining environmental DNA with remote sensing variables to map fish species distributions along a large river. Remote Sensing in Ecology and Conservation, 10(2), 220-235. doi:10.1002/rse2.366, Institutional Repository


Adde, A., Rey, P. L., Brun, P., Külling, N., Fopp, F., Altermatt, F., … Guisan, A. (2023). N-SDM: a high-performance computing pipeline for Nested Species Distribution Modelling. Ecography, 2023(6), e06540 (11 pp.). doi:10.1111/ecog.06540, Institutional Repository
Adde, A., Rey, P. L., Fopp, F., Petitpierre, B., Schweiger, A. K., Broennimann, O., … Guisan, A. (2023). Too many candidates: embedded covariate selection procedure for species distribution modelling with the covsel R package. Ecological Informatics, 75, 102080 (8 pp.). doi:10.1016/j.ecoinf.2023.102080, Institutional Repository
Alexander, J., Spaak, P., Möst, M., Straile, D., & Hetzenauer, H. (2023). Ökosystemforschung am Bodensee. Abschluss des Forschungsprojekts "Seewandel: Leben im Bodensee - gestern, heute und morgen". Aqua & Gas, 103(6), 54-59. , Institutional Repository
Altermatt, F., Carraro, L., Antonetti, M., Albouy, C., Zhang, Y., Lyet, A., … Pellissier, L. (2023). Quantifying biodiversity using eDNA from water bodies: general principles and recommendations for sampling designs. Environmental DNA, 5(4), 671-682. doi:10.1002/edn3.430, Institutional Repository
Alther, R., Krähenbühl, A., Bucher, P., & Altermatt, F. (2023). Optimizing laboratory cultures of Gammarus fossarum (Crustacea: Amphipoda) as a study organism in environmental sciences and ecotoxicology. Science of the Total Environment, 855, 158730 (9 pp.). doi:10.1016/j.scitotenv.2022.158730, Institutional Repository
Blackman, R. C., Walser, J. ‐C., Rüber, L., Brantschen, J., Villalba, S., Brodersen, J., … Altermatt, F. (2023). General principles for assignments of communities from eDNA: open versus closed taxonomic databases. Environmental DNA, 5(2), 326-342. doi:10.1002/edn3.382, Institutional Repository
Boschman, L. M., Carraro, L., Cassemiro, F. A. S., de Vries, J., Altermatt, F., Hagen, O., … Pellissier, L. (2023). Freshwater fish diversity in the western Amazon basin shaped by Andean uplift since the Late Cretaceous. Nature Ecology & Evolution, 7, 2037-2044. doi:10.1038/s41559-023-02220-8, Institutional Repository
Bosco, L., Moser, V., Jones, M. M., Opedal, Ø., Ovaskainen, O., Sonja, G., … Jacot, A. (2023). Habitat area and local habitat conditions outweigh fragmentation effects on insect communities in vineyards. Ecological Solutions and Evidence, 4(1), e12193 (12 pp.). doi:10.1002/2688-8319.12193, Institutional Repository
Brasseur, M. V., Martini, J., Wilfling, O., Wüthrich, R., Birnstiel, E., Oester, R., … Vitecek, S. (2023). Exploring macroinvertebrate biodiversity in the dynamic southern Balkan stream network of the Vjosa using preservative-based DNA metabarcoding. Aquatic Sciences, 85(2), 51 (15 pp.). doi:10.1007/s00027-023-00948-w, Institutional Repository
Brown, G. P., Hudson, C. M., & Shine, R. (2023). Do changes in body mass alter white blood cell profiles and immune function in Australian cane toads (Rhinella marina)?. Philosophical Transactions of the Royal Society B: Biological Sciences, 378(1882), 20220122 (9 pp.). doi:10.1098/rstb.2022.0122, Institutional Repository
Burdon, F. J., Reyes, M., Schönenberger, U., Räsänen, K., Tiegs, S. D., Eggen, R. I. L., & Stamm, C. (2023). Environmental context determines pollution impacts on ecosystem functioning. Oikos, 2023(2), e09131 (14 pp.). doi:10.1111/oik.09131, Institutional Repository
Carraro, L., Blackman, R. C., & Altermatt, F. (2023). Modelling environmental DNA transport in rivers reveals highly resolved spatio-temporal biodiversity patterns. Scientific Reports, 13(1), 8854 (14 pp.). doi:10.1038/s41598-023-35614-6, Institutional Repository
Carraro, L. (2023). Technical note: seamless extraction and analysis of river networks in R. Hydrology and Earth System Sciences, 27(20), 3733-3742. doi:10.5194/hess-27-3733-2023, Institutional Repository
Carvajal-Quintero, J., Comte, L., Giam, X., Olden, J. D., Brose, U., Erős, T., … Tedesco, P. A. (2023). Scale of population synchrony confirms macroecological estimates of minimum viable range size. Ecology Letters, 26(2), 291-301. doi:10.1111/ele.14152, Institutional Repository
Cereghetti, E., & Altermatt, F. (2023). Spatiotemporal dynamics in freshwater amphipod assemblages are associated with surrounding terrestrial land use type. Ecosphere, 14(3), e4469 (12 pp.). doi:10.1002/ecs2.4469, Institutional Repository
Chanut, P. C. M., Burdon, F. J., Datry, T., & Robinson, C. T. (2023). Convergence in floodplain pond communities indicates different pathways to community assembly. Aquatic Sciences, 85(2), 59 (16 pp.). doi:10.1007/s00027-023-00957-9, Institutional Repository
Chanut, P. C. M., Drost, A., Siebers, A. R., Paillex, A., & Robinson, C. T. (2023). Flow intermittency affects structural and functional properties of macroinvertebrate communities in alpine streams. Freshwater Biology, 68(2), 212-228. doi:10.1111/fwb.14018, Institutional Repository
Chonova, T., Rimet, F., Bouchez, A., Kahlert, M., Schneider, S. C., Bailet, B., … Keck, F. (2023). Revisiting global diversity and biogeography of freshwater diatoms: New insights from molecular data. Environmental DNA, 5(6), 1505-1515. doi:10.1002/edn3.475, Institutional Repository
Consoli, G., Siebers, A. R., Bruder, A., & Robinson, C. T. (2023). Long‐term reconstruction of energy fluxes in an alpine river: effects of flow regulation and restoration. River Research and Applications, 39(9), 1783-1794. doi:10.1002/rra.4189, Institutional Repository
Couton, M., Hürlemann, S., Studer, A., Alther, R., & Altermatt, F. (2023). Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land-use and geology. Molecular Ecology, 32(13), 3497-3512. doi:10.1111/mec.16955, Institutional Repository
Couton, M., Studer, A., Hürlemann, S., Locher, N., Knüsel, M., Alther, R., & Altermatt, F. (2023). Integrating citizen science and environmental DNA metabarcoding to study biodiversity of groundwater amphipods in Switzerland. Scientific Reports, 13(1), 18097 (13 pp.). doi:10.1038/s41598-023-44908-8, Institutional Repository
Couton, M., Viard, F., & Altermatt, F. (2023). Opportunities and inherent limits of using environmental DNA for population genetics. Environmental DNA, 5(5), 1048-1064. doi:10.1002/edn3.448, Institutional Repository
Dougherty, L. R., Rovenolt, F., Luyet, A., Jokela, J., & Stephenson, J. F. (2023). Ornaments indicate parasite load only if they are dynamic or parasites are contagious. Evolution Letters, 7(3), 176-190. doi:10.1093/evlett/qrad017, Institutional Repository
Feijen, F., Buser, C., Klappert, K., & Jokela, J. (2023). Parasite infection and the movement of the aquatic snail Potamopyrgus antipodarum along a depth cline. Ecology and Evolution, 13(5), e10124 (8 pp.). doi:10.1002/ece3.10124, Institutional Repository
Felmy, A., Streiff, A. B., & Jokela, J. (2023). Propensity for selfing varies within a population of hermaphroditic snails: coexistence of selfers, outcrossers and mixed-mating individuals. Royal Society Open Science, 10(10), 230532 (16 pp.). doi:10.1098/rsos.230532, Institutional Repository
Gimmi, E. L. (2023). Defensive symbiosis in the wild - patterns and dynamics of symbiont-conferred resistance in natural host-parasitoid communities (Doctoral dissertation). doi:10.3929/ethz-b-000617575, Institutional Repository
Gimmi, E., Wallisch, J., & Vorburger, C. (2023). Defensive symbiosis in the wild: seasonal dynamics of parasitism risk and symbiont‐conferred resistance. Molecular Ecology, 32(14), 4063-4077. doi:10.1111/mec.16976, Institutional Repository
Grigoropoulou, A., Hamid, S. A., Acosta, R., Akindele, E. O., Al‐Shami, S. A., Altermatt, F., … Domisch, S. (2023). The global EPTO database: worldwide occurrences of aquatic insects. Global Ecology and Biogeography, 32(5), 642-655. doi:10.1111/geb.13648, Institutional Repository
Haase, P., Bowler, D. E., Baker, N. J., Bonada, N., Domisch, S., Garcia Marquez, J. R., … Welti, E. A. R. (2023). The recovery of European freshwater biodiversity has come to a halt. Nature, 620, 582-588. doi:10.1038/s41586-023-06400-1, Institutional Repository
Haltiner, L., Rossbacher, S., Alexander, J., Dennis, S. R., & Spaak, P. (2023). Life in a changing environment: dreissenids' feeding response to different temperature. Hydrobiologia, 850, 4879-4890. doi:10.1007/s10750-023-05360-x, Institutional Repository
Harvey, E., Marleau, J. N., Gounand, I., Leroux, S. J., Firkowski, C. R., Altermatt, F., … Fortin, M. J. (2023). A general meta-ecosystem model to predict ecosystem functions at landscape extents. Ecography, 2023(11), e06790 (16 pp.). doi:10.1111/ecog.06790, Institutional Repository
Hertaeg, C., Vorburger, C., De Moraes, C. M., & Mescher, M. C. (2023). Effects of genotype and host environment on the cuticular hydrocarbon profiles of Lysiphlebus parasitoids and aggression by aphid-tending ants. Proceedings of the Royal Society B: Biological Sciences, 290(2009), 20231642 (11 pp.). doi:10.1098/rspb.2023.1642, Institutional Repository
Ho, H. C., Altermatt, F., & Carraro, L. (2023). Coupled biological and hydrological processes shape spatial food-web structures in riverine metacommunities. Frontiers in Ecology and Evolution, 11, 1147834 (16 pp.). doi:10.3389/fevo.2023.1147834, Institutional Repository
Ho, H. C., Pellissier, L., & Altermatt, F. (2023). Die Klimaerwärmung bedroht die biologische Vielfalt und intensive landwirtschaftliche Nutzung kann dies zusätzlich verschärfen. Le réchauffement climatique menace la biodiversité et l'agriculture intensive risque d'aggraver la situation. Nature et Paysage. Natur und Landschaft: Inside (1), 20-23. , Institutional Repository
Hudson, C. M., Cuenca Cambronero, M., Moosmann, M., Narwani, A., Spaak, P., Seehausen, O., & Matthews, B. (2023). Environmentally independent selection for hybrids between divergent freshwater stickleback lineages in semi-natural ponds. Journal of Evolutionary Biology, 36(8), 1166-1184. doi:10.1111/jeb.14194, Institutional Repository
Isles, P. D. F., Creed, I. F., Hessen, D. O., Kortelainen, P., Paterson, M., Pomati, F., … Bergström, A. K. (2023). Widespread synchrony in phosphorus concentrations in northern lakes linked to winter temperature and summer precipitation. Limnology and Oceanography Letters, 8(4), 639-648. doi:10.1002/lol2.10318, Institutional Repository
Jankowski, K. J., Johnson, K., Sethna, L., Julian, P., Wymore, A. S., Shogren, A. J., … Carey, J. C. (2023). Long‐term changes in concentration and yield of riverine dissolved silicon from the poles to the tropics. Global Biogeochemical Cycles, 37(9), e2022GB007678 (22 pp.). doi:10.1029/2022GB007678, Institutional Repository
Keck, F., Brantschen, J., & Altermatt, F. (2023). A combination of machine-learning and eDNA reveals the genetic signature of environmental change at the landscape levels. Molecular Ecology, 32(17), 4791-4800. doi:10.1111/mec.17073, Institutional Repository
Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511-518. doi:10.1111/1755-0998.13723, Institutional Repository
Khaliq, I., Biber, M., Bowler, D. E., & Hof, C. (2023). Global change impacts on bird biodiversity in South Asia: potential effects of future land-use and climate change on avian species richness in Pakistan. PeerJ, 11, e16212 (19 pp.). doi:10.7717/peerj.16212, Institutional Repository
Khaliq, I., Shahid, M. J., Kamran, H., Sheraz, M., Awais, M., Shabir, M., … Hof, C. (2023). The role of thermal tolerance in determining elevational distributions of four arthropod taxa in mountain ranges of southern Asia. Journal of Animal Ecology, 92(10), 2052-2066. doi:10.1111/1365-2656.13996, Institutional Repository
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Haltiner, L., Zhang, H., Anneville, O., De Ventura, L., DeWeber, J. T., Hesselschwerdt, J., … Dennis, S. R. (2022). The distribution and spread of quagga mussels in perialpine lakes north of the Alps. Aquatic Invasions, 17(2), 153-173. doi:10.3391/ai.2022.17.2.02, Institutional Repository
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Holenstein, K., Harvey, E., & Altermatt, F. (2022). Patch size distribution affects species invasion dynamics in dendritic networks. Oikos, 2022, e08679 (11 pp.). doi:10.1111/oik.08679, Institutional Repository
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Kahlert, M., Maaria Karjalainen, S., Keck, F., Kelly, M., Ramon, M., Rimet, F., … Zimmermann, J. (2022). Co-occurrence, ecological profiles and geographical distribution based on unique molecular identifiers of the common freshwater diatoms Fragilaria and Ulnaria. Ecological Indicators, 141, 109114 (13 pp.). doi:10.1016/j.ecolind.2022.109114, Institutional Repository
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Keck, F., Blackman, R. C., Bossart, R., Brantschen, J., Couton, M., Hürlemann, S., … Altermatt, F. (2022). Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology, 31(6), 1820-1835. doi:10.1111/mec.16364, Institutional Repository
Keck, F., Couton, M., & Altermatt, F. (2022). Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources, 23(4), 742-755. doi:10.1111/1755-0998.13746, Institutional Repository
Kyathanahally, S. P., Hardeman, T., Reyes, M., Merz, E., Bulas, T., Brun, P., … Baity-Jesi, M. (2022). Ensembles of data-efficient vision transformers as a new paradigm for automated classification in ecology. Scientific Reports, 12, 18590 (11 pp.). doi:10.1038/s41598-022-21910-0, Institutional Repository
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Llaberia-Robledillo, M., Balbuena, J. A., Sarabeev, V., & Llopis-Belenguer, C. (2022). Changes in native and introduced host–parasite networks. Biological Invasions, 24, 543-555. doi:10.1007/s10530-021-02657-7, Institutional Repository
Luo, M., Wang, S., Saavedra, S., Ebert, D., & Altermatt, F. (2022). Multispecies coexistence in fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(37), e2201503119 (8 pp.). doi:10.1073/pnas.2201503119, Institutional Repository
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Moerman, F., Fronhofer, E. A., Altermatt, F., & Wagner, A. (2022). Selection on growth rate and local adaptation drive genomic adaptation during experimental range expansions in the protist Tetrahymena thermophila. Journal of Animal Ecology, 91(6), 1088-1103. doi:10.1111/1365-2656.13598, Institutional Repository
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Moza, M. I., & Postolache, C. (2022). Optimized protocol for cyanobacterial 16s rrna analysis in Danube Delta lakes. Biointerface Research in Applied Chemistry, 12(2), 1365-1384. doi:10.33263/BRIAC122.13651384, Institutional Repository
Narayan, K. S., Vorburger, C., & Hafer‐Hahmann, N. (2022). Bottom‐up effect of host protective symbionts on parasitoid diversity: limited evidence from two field experiments. Journal of Animal Ecology, 91(3), 643-654. doi:10.1111/1365-2656.13650, Institutional Repository
Olive, M., Moerman, F., Fernandez-Cassi, X., Altermatt, F., & Kohn, T. (2022). Removal of waterborne viruses by Tetrahymena pyriformis is virus-specific and coincides with changes in protist swimming speed. Environmental Science and Technology, 56(7), 4062-4070. doi:10.1021/acs.est.1c05518, Institutional Repository
Palamara, G. M., Dennis, S. R., Haenggi, C., Schuwirth, N., & Reichert, P. (2022). Investigating the effect of pesticides on Daphnia population dynamics by inferring structure and parameters of a stochastic model. Ecological Modelling, 472, 110076 (13 pp.). doi:10.1016/j.ecolmodel.2022.110076, Institutional Repository
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Su, E., S. Fischer, R. Demmer-Steingruber, Nigg, S., Güsewell, S., Albrich, W. C., … Kahlert, C. R. (2022). Humoral and cellular responses to mRNA-based COVID-19 booster vaccinations in patients with solid neoplasms under active treatment. ESMO Open, 7(5), 100587 (11 pp.). doi:10.1016/j.esmoop.2022.100587, Institutional Repository
Tamminen, M., Spaak, J., Tlili, A., Eggen, R., Stamm, C., & Räsänen, K. (2022). Wastewater constituents impact biofilm microbial community in receiving streams. Science of the Total Environment, 807(3), 151080 (8 pp.). doi:10.1016/j.scitotenv.2021.151080, Institutional Repository
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Tomanović, Ž., Kavallieratos, N. G., Ye, Z., Nika, E. P., Petrović, A., Vollhardt, I. M. G., & Vorburger, C. (2022). Cereal aphid parasitoids in Europe (Hymenoptera: Braconidae: Aphidiinae): taxonomy, biodiversity, and ecology. Insects, 13(12), 1142 (25 pp.). doi:10.3390/insects13121142, Institutional Repository
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Twining, C. W., Weber, C., Kowarik, C., Gossner, M. M., Graham, C. H., Matthews, B., & Shipley, J. R. (2022). Zum Fressen gern: unsere Gewässer aus der Vogelperspektive. Wasser, Energie, Luft, 114(2), 68-74. , Institutional Repository
Udodenko, Y. G., Robinson, C. T., Choijil, J., Badrakh, R., Munkhbat, J., Ivanova, E. S., & Komov, V. T. (2022). Mercury levels in sediment, fish and macroinvertebrates of the Boroo River, northern Mongolia, under the legacy of gold mining. Ecotoxicology, 31, 312-323. doi:10.1007/s10646-021-02502-6, Institutional Repository
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Çetin, C., Furman, A., Kalkan, E., & Bilgin, R. (2022). Mitonuclear genetic patterns of divergence in the marbled crab, Pachygrapsus marmoratus (Fabricius, 1787) along the Turkish seas. PLoS One, 17(4), e0266506 (21 pp.). doi:10.1371/journal.pone.0266506, Institutional Repository
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Archambeault, S. L., Durston, D. J., Wan, A., El‐Sabaawi, R. W., Matthews, B., & Peichel, C. L. (2020). Phosphorus limitation does not drive loss of bony lateral plates in freshwater stickleback (Gasterosteus aculeatus). Evolution, International Journal of Organic Evolution, 74(9), 2088-2104. doi:10.1111/evo.14044, Institutional Repository
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Bernhard, G. H., Neale, R. E., Barnes, P. W., Neale, P. J., Zepp, R. G., Wilson, S. R., … White, C. C. (2020). Environmental effects of stratospheric ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2019. Photochemical and Photobiological Sciences, 19(5), 542-584. doi:10.1039/d0pp90011g, Institutional Repository
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Blackman, R. C., Ling, K. K. S., Harper, L. R., Shum, P., Hänfling, B., & Lawson-Handley, L. (2020). Targeted and passive environmental DNA approaches outperform established methods for detection of quagga mussels, Dreissena rostriformis bugensis in flowing water. Ecology and Evolution, 10(23), 13248-13259. doi:10.1002/ece3.6921, Institutional Repository
Blasco-Costa, I., Seppälä, K., Feijen, F., Zajac, N., Klappert, K., & Jokela, J. (2020). A new species of Atriophallophorus Deblock & Rosé, 1964 (Trematoda: Microphallidae) described from in vitro-grown adults and metacercariae from Potamopyrgus antipodarum (Gray, 1843) (Mollusca: Tateidae). Journal of Helminthology, 94, e108 (15 pp.). doi:10.1017/S0022149X19000993, Institutional Repository
Brans, K. I., Govaert, L., & De Meester, L. (2020). Evolutionary dynamics of metacommunities in urbanized landscapes. In M. Szulkin, J. Munshi-South, & A. Charmantier (Eds.), Urban evolutionary biology (pp. 175-196). doi:10.1093/oso/9780198836841.003.0011, Institutional Repository
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Burdon, F. J. (2020). Agriculture and mining contamination contribute to a productivity gradient driving cross-ecosystem associations between stream insects and riparian arachnids. In J. M. Kraus, D. M. Walters, & M. A. Mills (Eds.), Contaminants and ecological subsidies. The land-water interface (pp. 61-90). doi:10.1007/978-3-030-49480-3_4, Institutional Repository
Burdon, F. J., McIntosh, A. R., & Harding, J. S. (2020). Mechanisms of trophic niche compression: evidence from landscape disturbance. Journal of Animal Ecology, 89, 730-744. doi:10.1111/1365-2656.13142, Institutional Repository
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Cairns, J., Moerman, F., Fronhofer, E. A., Altermatt, F., & Hiltunen, T. (2020). Evolution in interacting species alters predator life-history traits, behaviour and morphology in experimental microbial communities. Proceedings of the Royal Society B: Biological Sciences, 287(1928), 20200652 (10 pp.). doi:10.1098/rspb.2020.0652, Institutional Repository
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Carraro, L., Bertuzzo, E., Fronhofer, E. A., Furrer, R., Gounand, I., Rinaldo, A., & Altermatt, F. (2020). Generation and application of river network analogues for use in ecology and evolution. Ecology and Evolution, 10(14), 7537-7550. doi:10.1002/ece3.6479, Institutional Repository
Carraro, L., Toffolon, M., Rinaldo, A., & Bertuzzo, E. (2020). SESTET: a spatially‐explicit stream temperature model based on equilibrium temperature. Hydrological Processes, 34, 355-369. doi:10.1002/hyp.13591, Institutional Repository
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