Department Aquatic Ecology

Publications

2024

Artana, C., Capitani, L., Santos Garcia, G., Angelini, R., & Coll, M. (2024). Food web trophic control modulates tropical Atlantic reef ecosystems response to marine heat wave intensity and duration. Journal of Animal Ecology. doi:10.1111/1365-2656.14107, Institutional Repository
Blackman, R., Couton, M., Keck, F., Kirschner, D., Carraro, L., Cereghetti, E., … Altermatt, F. (2024). Environmental DNA: the next chapter. Molecular Ecology, 33(11), e17355 (17 pp.). doi:10.1111/mec.17355, Institutional Repository
Blackman, R. C., Carraro, L., Keck, F., & Altermatt, F. (2024). Measuring the state of aquatic environments using eDNA - Upscaling spatial resolution of biotic indices. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1904), 20230121 (9 pp.). doi:10.1098/rstb.2023.0121, Institutional Repository
Brantschen, J., & Altermatt, F. (2024). Contrasting strengths of eDNA and electrofishing compared to historic records for assessing fish community diversity and composition. Canadian Journal of Fisheries and Aquatic Sciences, 81(2), 178-189. doi:10.1139/cjfas-2023-0053, Institutional Repository
Brantschen, J., Fopp, F., Adde, A., Keck, F., Guisan, A., Pellissier, L., & Altermatt, F. (2024). Habitat suitability models reveal the spatial signal of environmental DNA in riverine networks. Ecography, e07267 (12 pp.). doi:10.1111/ecog.07267, Institutional Repository
Byrnes, J. E. K., Brown, A., Sheridan, K., Peller, T., Lawlor, J., Beaulieu, J., … Benes, K. (2024). Notes from the past show how local variability can stymie urchins and the rise of the reds in the Gulf of Maine. Ecosphere, 15(4), e4800 (11 pp.). doi:10.1002/ecs2.4800, Institutional Repository
Carraro, L., & Altermatt, F. (2024). eDITH: an R-package to spatially project eDNA-based biodiversity across river networks with minimal prior information. Methods in Ecology and Evolution, 15(5), 806-815. doi:10.1111/2041-210X.14317, Institutional Repository
Colls, M., Viza, A., Zufiarre, A., Camacho-Santamans, A., Laini, A., González-Ferreras, A. M., … Romero, F. (2024). Impacts of diffuse urban stressors on stream benthic communities and ecosystem functioning: a review. Limnetica, 43(1), 89-108. doi:10.23818/limn.43.07, Institutional Repository
Daugaard, U., Merkli, S., Merz, E., Pomati, F., & Petchey, O. L. (2024). The dependence of forecasts on sampling frequency as a guide to optimizing monitoring in community ecology. Ecosphere, 15(2), e4786 (14 pp.). doi:10.1002/ecs2.4786, Institutional Repository
Fronhofer, E. A., Govaert, L., O'Connor, M. I., Schreiber, S. J., & Altermatt, F. (2024). The shape of density dependence and the relationship between population growth, intraspecific competition and equilibrium population density. Oikos, 2024(2), e09824 (14 pp.). doi:10.1111/oik.09824, Institutional Repository
Garlovsky, M. D., Whittington, E., Albrecht, T., Arenas-Castro, H., Castillo, D. M., Keais, G. L., … Weber, A. A. T. (2024). Synthesis and scope of the role of postmating prezygotic isolation in speciation. Cold Spring Harbor Perspectives in Biology, a041429 (41 pp.). doi:10.1101/cshperspect.a041429, Institutional Repository
Gimmi, E., Wallisch, J., & Vorburger, C. (2024). Ecological divergence despite common mating sites: genotypes and symbiotypes shed light on cryptic diversity in the black bean aphid species complex. Heredity. doi:10.1038/s41437-024-00687-0, Institutional Repository
Gimmi, E., & Vorburger, C. (2024). High specificity of symbiont-conferred resistance in an aphid-parasitoid field community. Journal of Evolutionary Biology, 37(2), 162-170. doi:10.1093/jeb/voad013, Institutional Repository
Goicolea, T., Adde, A., Broennimann, O., García-Viñas, J. I., Gastón, A., José Aroca-Fernández, M., … G. Mateo, R. (2024). Spatially-nested hierarchical species distribution models to overcome niche truncation in national-scale studies. Ecography. doi:10.1111/ecog.07328, Institutional Repository
Hafer‐Hahmann, N., & Vorburger, C. (2024). Parasitoid species diversity has no effect on protective symbiont diversity in experimental host‐parasitoid populations. Ecology and Evolution, 14(3), e11090 (30 pp.). doi:10.1002/ece3.11090, Institutional Repository
Halstead-Nussloch, G., Signorini, S. G., Giulio, M., Crocetta, F., Munari, M., Della Torre, C., & Weber, A. A. T. (2024). The genome of the rayed Mediterranean limpet Patella caerulea (Linnaeus, 1758). Genome Biology and Evolution, 16(4), evae070 (8 pp.). doi:10.1093/gbe/evae070, Institutional Repository
Haltiner, L., Spaak, P., Dennis, S. R., & Feulner, P. G. D. (2024). Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes. Evolutionary Applications, 17(1), e13620 (16 pp.). doi:10.1111/eva.13620, Institutional Repository
Ho, H. C., & Altermatt, F. (2024). Associating the structure of Lepidoptera-plant interaction networks across clades and life stages to environmental gradients. Journal of Biogeography, 51(4), 725-738. doi:10.1111/jbi.14776, Institutional Repository
Horváthová, T., Lafuente, E., Bartels, J. ‐A., Wallisch, J., & Vorburger, C. (2024). Tolerance to environmental pollution in the freshwater crustacean Asellus aquaticus : a role for the microbiome. Environmental Microbiology Reports, 16(3), e13252 (16 pp.). doi:10.1111/1758-2229.13252, Institutional Repository
Hudson, C. M., Stalder, D., & Vorburger, C. (2024). Clines of resistance to parasitoids: the multifarious effects of temperature on defensive symbioses in insects. Current Opinion in Insect Science, 64, 101208 (6 pp.). doi:10.1016/j.cois.2024.101208, Institutional Repository
Ilg, C., & Alther, R. (2024). Ökologischer Zustand von Schweizer Bächen. Die meisten der untersuchten Bäche erfüllen ihre Rolle als Lebensraum für Tiere nur eingeschränkt. Aqua & Gas, 104(4), 46-52. , Institutional Repository
Jeevannavar, A., Narwani, A., Matthews, B., Spaak, P., Brantschen, J., Mächler, E., … Tamminen, M. (2024). Foundation species stabilize an alternative eutrophic state in nutrient-disturbed ponds via selection on microbial community. Frontiers in Microbiology, 15, 1310374 (14 pp.). doi:10.3389/fmicb.2024.1310374, Institutional Repository
Khaliq, I., Chollet Ramampiandra, E., Vorburger, C., Narwani, A., & Schuwirth, N. (2024). The effect of water temperature changes on biological water quality assessment. Ecological Indicators, 159, 111652 (10 pp.). doi:10.1016/j.ecolind.2024.111652, Institutional Repository
Khaliq, I., Rixen, C., Zellweger, F., Graham, C. H., Gossner, M. M., McFadden, I. R., … Narwani, A. (2024). Warming underpins community turnover in temperate freshwater and terrestrial communities. Nature Communications, 15, 1921 (9 pp.). doi:10.1038/s41467-024-46282-z, Institutional Repository
Külling, N., Adde, A., Lambiel, A., Wicki, S., Guisan, A., Grêt-Regamey, A., & Lehmann, A. (2024). Nature's contributions to people and biodiversity mapping in Switzerland: spatial patterns and environmental drivers. Ecological Indicators, 163, 112079 (15 pp.). doi:10.1016/j.ecolind.2024.112079, Institutional Repository
Külling, N., Adde, A., Fopp, F., Schweiger, A. K., Broennimann, O., Rey, P. L., … Guisan, A. (2024). SWECO25: a cross-thematic raster database for ecological research in Switzerland. Scientific Data, 11(1), 21 (7 pp.). doi:10.1038/s41597-023-02899-1, Institutional Repository
Mammola, S., Altermatt, F., Alther, R., Amorim, I. R., Băncilă, R. I., Borges, P. A. V., … Malard, F. (2024). Perspectives and pitfalls in preserving subterranean biodiversity through protected areas. npj Biodiversity, 3, 2 (9 pp.). doi:10.1038/s44185-023-00035-1, Institutional Repository
Mayor, S., Allan, E., Altermatt, F., Isbell, F., Schaepman, M. E., Schmid, B., & Niklaus, P. A. (2024). Diversity–functioning relationships across hierarchies of biological organization. Oikos, 2024(1), e10225 (13 PP.). doi:10.1111/oik.10225, Institutional Repository
Moor, H., Bergamini, A., Vorburger, C., Holderegger, R., Bühler, C., Bircher, N., & Schmidt, B. R. (2024). Building pondscapes for amphibian metapopulations. Conservation Biology, e14165 (16 pp.). doi:10.1111/cobi.14281, Institutional Repository
Moosmann, M., Greenway, R., Oester, R., & Matthews, B. (2024). The role of fish predators and their foraging traits in shaping zooplankton community structure. Ecology Letters, 27(2), e14382 (13 pp.). doi:10.1111/ele.14382, Institutional Repository
Peller, T., & Altermatt, F. (2024). Invasive species drive cross-ecosystem effects worldwide. Nature Ecology & Evolution. doi:10.1038/s41559-024-02380-1, Institutional Repository
Perrelet, K., Moretti, M., Dietzel, A., Altermatt, F., & Cook, L. M. (2024). Engineering blue-green infrastructure for and with biodiversity in cities. npj Urban Sustainability, 4(1), 27. doi:10.1038/s42949-024-00163-y, Institutional Repository
Perry, W. B., Seymour, M., Orsini, L., Jâms, I. B., Milner, N., Edwards, F., … Creer, S. (2024). An integrated spatio-temporal view of riverine biodiversity using environmental DNA metabarcoding. Nature Communications, 15(1), 4372. doi:10.1038/s41467-024-48640-3, Institutional Repository
Saccò, M., Mammola, S., Altermatt, F., Alther, R., Bolpagni, R., Brancelj, A., … Reinecke, R. (2024). Groundwater is a hidden global keystone ecosystem. Global Change Biology, 30(1), e17066 (20 pp.). doi:10.1111/gcb.17066, Institutional Repository
Schillé, L., Valdés-Correcher, E., Archaux, F., Bălăcenoiu, F., Bjørn, M. C., Bogdziewicz, M., … Castagneyrol, B. (2024). Decomposing drivers in avian insectivory: large-scale effects of climate, habitat and bird diversity. Journal of Biogeography, 51(6), 1079-1094. doi:10.1111/jbi.14808, Institutional Repository
Schneider, A. S., Knüsel, M., Alther, R., & Altermatt, F. (2024). Grundwasserbiodiversität: Makroinvertebraten in Schweizer Grundwasserökosystemen - Vorkommen, Vielfalt und Biomasse. Aqua & Gas, 104(3), 16-21. , Institutional Repository
Shovon, T. A., Auge, H., Haase, J., & Nock, C. A. (2024). Positive effects of tree species diversity on productivity switch to negative after severe drought mortality in a temperate forest experiment. Global Change Biology, 30(3), e17252 (14 pp.). doi:10.1111/gcb.17252, Institutional Repository
Sieber, N., King, A., Krieg, R., Zenker, A., Vorburger, C., & Hartikainen, H. (2024). Large‐scale eDNA monitoring of multiple aquatic pathogens as a tool to provide risk maps for wildlife diseases. Environmental DNA, 6(1), e427 (14 pp.). doi:10.1002/edn3.427, Institutional Repository
Sinclair, J. S., Welti, E. A. R., Altermatt, F., Álvarez-Cabria, M., Aroviita, J., Baker, N. J., … Haase, P. (2024). Multi-decadal improvements in the ecological quality of European rivers are not consistently reflected in biodiversity metrics. Nature Ecology & Evolution, 8, 430-441. doi:10.1038/s41559-023-02305-4, Institutional Repository
Spaak, P., Alexander, J., Baehni, L., Burlakova, L. E., Dennis, S. R., Feulner, P. G. D., … Stöckli, R. (2024). Voralpine Seen und Trinkwasserversorgung durch Muscheln bedroht. Wasserwirtschaft Wassertechnik wwt, 3, 73-79. , Institutional Repository
Stoffers, T., Altermatt, F., Baldan, D., Bilous, O., Borgwardt, F., Buijse, A. D., … Hein, T. (2024). Reviving Europe's rivers: seven challenges in the implementation of the Nature Restoration Law to restore free‐flowing rivers. Wiley Interdisciplinary Reviews: Water, e1717 (23 pp.). doi:10.1002/wat2.1717, Institutional Repository
Talluto, M., del Campo, R., Estévez, E., Altermatt, F., Datry, T., & Singer, G. (2024). Towards (better) fluvial meta-ecosystem ecology: a research perspective. npj Biodiversity, 3, 3 (10 pp.). doi:10.1038/s44185-023-00036-0, Institutional Repository
Thomas, P. K., Jacob, M., Acevedo-Trejos, E., Hillebrand, H., & Striebel, M. (2024). Species richness and intraspecific variation interactively shape marine diatom community functioning. Limnology and Oceanography Letters. doi:10.1002/lol2.10398, Institutional Repository
Tiegs, S. D., Capps, K. A., Costello, D. M., Schmidt, J. P., Patrick, C. J., Follstad Shah, J. J., … Zwart, J. A. (2024). Human activities shape global patterns of decomposition rates in rivers. Science, 384(6701), 1191-1195. doi:10.1126/science.adn1262, Institutional Repository
To, S. W., Acevedo-Trejos, E., Chakraborty, S., Pomati, F., & Merico, A. (2024). Grazing strategies determine the size composition of phytoplankton in eutrophic lakes. Limnology and Oceanography, 69(4), 933-946. doi:10.1002/lno.12538, Institutional Repository
Van de Schoot, E., Merckx, T., Ebert, D., Wesselingh, R. A., Altermatt, F., & Van Dyck, H. (2024). Evolutionary change in flight-to-light response in urban moths comes with changes in wing morphology. Biology Letters, 20(3), 20230486 (7 pp.). doi:10.1098/rsbl.2023.0486, Institutional Repository
Zheng, L., Barry, K. E., Guerrero-Ramírez, N. R., Craven, D., Reich, P. B., Verheyen, K., … Hautier, Y. (2024). Effects of plant diversity on productivity strengthen over time due to trait-dependent shifts in species overyielding. Nature Communications, 15, 2078 (14 pp.). doi:10.1038/s41467-024-46355-z, Institutional Repository
Zong, S., Brantschen, J., Zhang, X., Albouy, C., Valentini, A., Zhang, H., … Pellissier, L. (2024). Combining environmental DNA with remote sensing variables to map fish species distributions along a large river. Remote Sensing in Ecology and Conservation, 10(2), 220-235. doi:10.1002/rse2.366, Institutional Repository

2023

Adde, A., Rey, P. L., Brun, P., Külling, N., Fopp, F., Altermatt, F., … Guisan, A. (2023). N-SDM: a high-performance computing pipeline for Nested Species Distribution Modelling. Ecography, 2023(6), e06540 (11 pp.). doi:10.1111/ecog.06540, Institutional Repository
Adde, A., Rey, P. L., Fopp, F., Petitpierre, B., Schweiger, A. K., Broennimann, O., … Guisan, A. (2023). Too many candidates: embedded covariate selection procedure for species distribution modelling with the covsel R package. Ecological Informatics, 75, 102080 (8 pp.). doi:10.1016/j.ecoinf.2023.102080, Institutional Repository
Alexander, J., Spaak, P., Möst, M., Straile, D., & Hetzenauer, H. (2023). Ökosystemforschung am Bodensee. Abschluss des Forschungsprojekts "Seewandel: Leben im Bodensee - gestern, heute und morgen". Aqua & Gas, 103(6), 54-59. , Institutional Repository
Altermatt, F., Carraro, L., Antonetti, M., Albouy, C., Zhang, Y., Lyet, A., … Pellissier, L. (2023). Quantifying biodiversity using eDNA from water bodies: general principles and recommendations for sampling designs. Environmental DNA, 5(4), 671-682. doi:10.1002/edn3.430, Institutional Repository
Alther, R., Krähenbühl, A., Bucher, P., & Altermatt, F. (2023). Optimizing laboratory cultures of Gammarus fossarum (Crustacea: Amphipoda) as a study organism in environmental sciences and ecotoxicology. Science of the Total Environment, 855, 158730 (9 pp.). doi:10.1016/j.scitotenv.2022.158730, Institutional Repository
Blackman, R. C., Walser, J. ‐C., Rüber, L., Brantschen, J., Villalba, S., Brodersen, J., … Altermatt, F. (2023). General principles for assignments of communities from eDNA: open versus closed taxonomic databases. Environmental DNA, 5(2), 326-342. doi:10.1002/edn3.382, Institutional Repository
Boschman, L. M., Carraro, L., Cassemiro, F. A. S., de Vries, J., Altermatt, F., Hagen, O., … Pellissier, L. (2023). Freshwater fish diversity in the western Amazon basin shaped by Andean uplift since the Late Cretaceous. Nature Ecology & Evolution, 7, 2037-2044. doi:10.1038/s41559-023-02220-8, Institutional Repository
Bosco, L., Moser, V., Jones, M. M., Opedal, Ø., Ovaskainen, O., Sonja, G., … Jacot, A. (2023). Habitat area and local habitat conditions outweigh fragmentation effects on insect communities in vineyards. Ecological Solutions and Evidence, 4(1), e12193 (12 pp.). doi:10.1002/2688-8319.12193, Institutional Repository
Brasseur, M. V., Martini, J., Wilfling, O., Wüthrich, R., Birnstiel, E., Oester, R., … Vitecek, S. (2023). Exploring macroinvertebrate biodiversity in the dynamic southern Balkan stream network of the Vjosa using preservative-based DNA metabarcoding. Aquatic Sciences, 85(2), 51 (15 pp.). doi:10.1007/s00027-023-00948-w, Institutional Repository
Brown, G. P., Hudson, C. M., & Shine, R. (2023). Do changes in body mass alter white blood cell profiles and immune function in Australian cane toads (Rhinella marina)?. Philosophical Transactions of the Royal Society B: Biological Sciences, 378(1882), 20220122 (9 pp.). doi:10.1098/rstb.2022.0122, Institutional Repository
Burdon, F. J., Reyes, M., Schönenberger, U., Räsänen, K., Tiegs, S. D., Eggen, R. I. L., & Stamm, C. (2023). Environmental context determines pollution impacts on ecosystem functioning. Oikos, 2023(2), e09131 (14 pp.). doi:10.1111/oik.09131, Institutional Repository
Carraro, L., Blackman, R. C., & Altermatt, F. (2023). Modelling environmental DNA transport in rivers reveals highly resolved spatio-temporal biodiversity patterns. Scientific Reports, 13(1), 8854 (14 pp.). doi:10.1038/s41598-023-35614-6, Institutional Repository
Carraro, L. (2023). Technical note: seamless extraction and analysis of river networks in R. Hydrology and Earth System Sciences, 27(20), 3733-3742. doi:10.5194/hess-27-3733-2023, Institutional Repository
Carvajal-Quintero, J., Comte, L., Giam, X., Olden, J. D., Brose, U., Erős, T., … Tedesco, P. A. (2023). Scale of population synchrony confirms macroecological estimates of minimum viable range size. Ecology Letters, 26(2), 291-301. doi:10.1111/ele.14152, Institutional Repository
Cereghetti, E., & Altermatt, F. (2023). Spatiotemporal dynamics in freshwater amphipod assemblages are associated with surrounding terrestrial land use type. Ecosphere, 14(3), e4469 (12 pp.). doi:10.1002/ecs2.4469, Institutional Repository
Chanut, P. C. M., Burdon, F. J., Datry, T., & Robinson, C. T. (2023). Convergence in floodplain pond communities indicates different pathways to community assembly. Aquatic Sciences, 85(2), 59 (16 pp.). doi:10.1007/s00027-023-00957-9, Institutional Repository
Chanut, P. C. M., Drost, A., Siebers, A. R., Paillex, A., & Robinson, C. T. (2023). Flow intermittency affects structural and functional properties of macroinvertebrate communities in alpine streams. Freshwater Biology, 68(2), 212-228. doi:10.1111/fwb.14018, Institutional Repository
Chonova, T., Rimet, F., Bouchez, A., Kahlert, M., Schneider, S. C., Bailet, B., … Keck, F. (2023). Revisiting global diversity and biogeography of freshwater diatoms: New insights from molecular data. Environmental DNA, 5(6), 1505-1515. doi:10.1002/edn3.475, Institutional Repository
Consoli, G., Siebers, A. R., Bruder, A., & Robinson, C. T. (2023). Long‐term reconstruction of energy fluxes in an alpine river: effects of flow regulation and restoration. River Research and Applications, 39(9), 1783-1794. doi:10.1002/rra.4189, Institutional Repository
Couton, M., Hürlemann, S., Studer, A., Alther, R., & Altermatt, F. (2023). Groundwater environmental DNA metabarcoding reveals hidden diversity and reflects land-use and geology. Molecular Ecology, 32(13), 3497-3512. doi:10.1111/mec.16955, Institutional Repository
Couton, M., Studer, A., Hürlemann, S., Locher, N., Knüsel, M., Alther, R., & Altermatt, F. (2023). Integrating citizen science and environmental DNA metabarcoding to study biodiversity of groundwater amphipods in Switzerland. Scientific Reports, 13(1), 18097 (13 pp.). doi:10.1038/s41598-023-44908-8, Institutional Repository
Couton, M., Viard, F., & Altermatt, F. (2023). Opportunities and inherent limits of using environmental DNA for population genetics. Environmental DNA, 5(5), 1048-1064. doi:10.1002/edn3.448, Institutional Repository
Dougherty, L. R., Rovenolt, F., Luyet, A., Jokela, J., & Stephenson, J. F. (2023). Ornaments indicate parasite load only if they are dynamic or parasites are contagious. Evolution Letters, 7(3), 176-190. doi:10.1093/evlett/qrad017, Institutional Repository
Feijen, F., Buser, C., Klappert, K., & Jokela, J. (2023). Parasite infection and the movement of the aquatic snail Potamopyrgus antipodarum along a depth cline. Ecology and Evolution, 13(5), e10124 (8 pp.). doi:10.1002/ece3.10124, Institutional Repository
Felmy, A., Streiff, A. B., & Jokela, J. (2023). Propensity for selfing varies within a population of hermaphroditic snails: coexistence of selfers, outcrossers and mixed-mating individuals. Royal Society Open Science, 10(10), 230532 (16 pp.). doi:10.1098/rsos.230532, Institutional Repository
Gimmi, E. L. (2023). Defensive symbiosis in the wild - patterns and dynamics of symbiont-conferred resistance in natural host-parasitoid communities (Doctoral dissertation). doi:10.3929/ethz-b-000617575, Institutional Repository
Gimmi, E., Wallisch, J., & Vorburger, C. (2023). Defensive symbiosis in the wild: seasonal dynamics of parasitism risk and symbiont‐conferred resistance. Molecular Ecology, 32(14), 4063-4077. doi:10.1111/mec.16976, Institutional Repository
Grigoropoulou, A., Hamid, S. A., Acosta, R., Akindele, E. O., Al‐Shami, S. A., Altermatt, F., … Domisch, S. (2023). The global EPTO database: worldwide occurrences of aquatic insects. Global Ecology and Biogeography, 32(5), 642-655. doi:10.1111/geb.13648, Institutional Repository
Haase, P., Bowler, D. E., Baker, N. J., Bonada, N., Domisch, S., Garcia Marquez, J. R., … Welti, E. A. R. (2023). The recovery of European freshwater biodiversity has come to a halt. Nature, 620, 582-588. doi:10.1038/s41586-023-06400-1, Institutional Repository
Haltiner, L., Rossbacher, S., Alexander, J., Dennis, S. R., & Spaak, P. (2023). Life in a changing environment: dreissenids' feeding response to different temperature. Hydrobiologia, 850, 4879-4890. doi:10.1007/s10750-023-05360-x, Institutional Repository
Harvey, E., Marleau, J. N., Gounand, I., Leroux, S. J., Firkowski, C. R., Altermatt, F., … Fortin, M. J. (2023). A general meta-ecosystem model to predict ecosystem functions at landscape extents. Ecography, 2023(11), e06790 (16 pp.). doi:10.1111/ecog.06790, Institutional Repository
Hertaeg, C., Vorburger, C., De Moraes, C. M., & Mescher, M. C. (2023). Effects of genotype and host environment on the cuticular hydrocarbon profiles of Lysiphlebus parasitoids and aggression by aphid-tending ants. Proceedings of the Royal Society B: Biological Sciences, 290(2009), 20231642 (11 pp.). doi:10.1098/rspb.2023.1642, Institutional Repository
Ho, H. C., Altermatt, F., & Carraro, L. (2023). Coupled biological and hydrological processes shape spatial food-web structures in riverine metacommunities. Frontiers in Ecology and Evolution, 11, 1147834 (16 pp.). doi:10.3389/fevo.2023.1147834, Institutional Repository
Ho, H. C., Pellissier, L., & Altermatt, F. (2023). Die Klimaerwärmung bedroht die biologische Vielfalt und intensive landwirtschaftliche Nutzung kann dies zusätzlich verschärfen. Le réchauffement climatique menace la biodiversité et l'agriculture intensive risque d'aggraver la situation. Nature et Paysage. Natur und Landschaft: Inside (1), 20-23. , Institutional Repository
Hudson, C. M., Cuenca Cambronero, M., Moosmann, M., Narwani, A., Spaak, P., Seehausen, O., & Matthews, B. (2023). Environmentally independent selection for hybrids between divergent freshwater stickleback lineages in semi-natural ponds. Journal of Evolutionary Biology, 36(8), 1166-1184. doi:10.1111/jeb.14194, Institutional Repository
Isles, P. D. F., Creed, I. F., Hessen, D. O., Kortelainen, P., Paterson, M., Pomati, F., … Bergström, A. K. (2023). Widespread synchrony in phosphorus concentrations in northern lakes linked to winter temperature and summer precipitation. Limnology and Oceanography Letters, 8(4), 639-648. doi:10.1002/lol2.10318, Institutional Repository
Jankowski, K. J., Johnson, K., Sethna, L., Julian, P., Wymore, A. S., Shogren, A. J., … Carey, J. C. (2023). Long‐term changes in concentration and yield of riverine dissolved silicon from the poles to the tropics. Global Biogeochemical Cycles, 37(9), e2022GB007678 (22 pp.). doi:10.1029/2022GB007678, Institutional Repository
Keck, F., Brantschen, J., & Altermatt, F. (2023). A combination of machine-learning and eDNA reveals the genetic signature of environmental change at the landscape levels. Molecular Ecology, 32(17), 4791-4800. doi:10.1111/mec.17073, Institutional Repository
Keck, F., & Altermatt, F. (2023). Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb. Molecular Ecology Resources, 23(2), 511-518. doi:10.1111/1755-0998.13723, Institutional Repository
Khaliq, I., Biber, M., Bowler, D. E., & Hof, C. (2023). Global change impacts on bird biodiversity in South Asia: potential effects of future land-use and climate change on avian species richness in Pakistan. PeerJ, 11, e16212 (19 pp.). doi:10.7717/peerj.16212, Institutional Repository
Khaliq, I., Shahid, M. J., Kamran, H., Sheraz, M., Awais, M., Shabir, M., … Hof, C. (2023). The role of thermal tolerance in determining elevational distributions of four arthropod taxa in mountain ranges of southern Asia. Journal of Animal Ecology, 92(10), 2052-2066. doi:10.1111/1365-2656.13996, Institutional Repository
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Llopis-Belenguer, C., Balbuena, J. A., Blasco-Costa, I., Karvonen, A., Sarabeev, V., & Jokela, J. (2023). Sensitivity of bipartite network analyses to incomplete sampling and taxonomic uncertainty. Ecology, 104(4), e3974 (14 pp.). doi:10.1002/ecy.3974, Institutional Repository
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Lustenhouwer, N., Moerman, F., Altermatt, F., Bassar, R. D., Bocedi, G., Bonte, D., … Berger, D. (2023). Experimental evolution of dispersal: unifying theory, experiments and natural systems. Journal of Animal Ecology, 92(6), 1113-1123. doi:10.1111/1365-2656.13930, Institutional Repository
Maitner, B. S., Halbritter, A. H., Telford, R. J., Strydom, T., Chacon, J., Lamanna, C., … Enquist, B. J. (2023). Bootstrapping outperforms community-weighted approaches for estimating the shapes of phenotypic distributions. Methods in Ecology and Evolution, 14(10), 2592-2610. doi:10.1111/2041-210X.14160, Institutional Repository
Martin, P., Knüsel, M., Alther, R., Altermatt, F., Ferrari, B., & Vivien, R. (2023). Haplotaxis gordioides (Hartmann in Oken, 1819) (Annelida, Clitellata) as a sub-cosmopolitan species: a commonly held view challenged by DNA barcoding. Zoosymposia, 23, 78-93. doi:10.11646/zoosymposia.23.1.10, Institutional Repository
Martini, J., Walther, F., Schenekar, T., Birnstiel, E., Wüthrich, R., Oester, R., … Vitecek, S. (2023). The last hideout: abundance patterns of the not-quite-yet extinct mayfly Prosopistoma pennigerum in the Albanian Vjosa River network. Insect Conservation and Diversity, 16(2), 285-297. doi:10.1111/icad.12620, Institutional Repository
McFadden, I. R., Sendek, A., Brosse, M., Bach, P. M., Baity‐Jesi, M., Bolliger, J., … Narwani, A. (2023). Linking human impacts to community processes in terrestrial and freshwater ecosystems. Ecology Letters, 26(2), 203-218. doi:10.1111/ele.14153, Institutional Repository
Merz, E., Kitahara, M. V., & Flores, A. A. V. (2023). A legacy of invasive sun corals: distinct mobile invertebrate assemblages at near-reef coral-dominated rubble. Marine Environmental Research, 188, 105974 (8 pp.). doi:10.1016/j.marenvres.2023.105974, Institutional Repository
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Merz, E., Saberski, E., Gilarranz, L. J., Isles, P. D. F., Sugihara, G., Berger, C., & Pomati, F. (2023). Disruption of ecological networks in lakes by climate change and nutrient fluctuations. Nature Climate Change, 13, 389-396. doi:10.1038/s41558-023-01615-6, Institutional Repository
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Reji Chacko, M., Altermatt, F., Fopp, F., Guisan, A., Keggin, T., Lyet, A., … Pellissier, L. (2023). Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes. Oecologia, 202, 699-713. doi:10.1007/s00442-023-05428-4, Institutional Repository
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Robinson, C. T., Consoli, G., & Ortlepp, J. (2023). Importance of artificial high flows in maintaining the ecological integrity of a regulated river. Science of the Total Environment, 882, 163569 (12 pp.). doi:10.1016/j.scitotenv.2023.163569, Institutional Repository
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Ruthsatz, K., Eterovick, P. C., Bartels, F., & Mausbach, J. (2023). Contributions of water-borne corticosterone as one non-invasive biomarker in assessing nitrate pollution stress in tadpoles of Rana temporaria. General and Comparative Endocrinology, 331, 114164 (10 pp.). doi:10.1016/j.ygcen.2022.114164, Institutional Repository
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Schneider, A. S., Knüsel, M., & Altermatt, F. (2023). Assessment of occurrence, diversity, and biomass of macroinvertebrates in Swiss groundwater systems using citizen science data. Subterranean Biology, 46, 147-164. doi:10.3897/subtbiol.46.112569, Institutional Repository
Seppälä, O., & Schlegel, T. (2023). Substrate specificity of phenoloxidase-like activity in an ecoimmunological model species Lymnaea stagnalis. Journal of Molluscan Studies, 89(1), eyad005 (6 pp.). doi:10.1093/mollus/eyad005, Institutional Repository
Soto, I., Cuthbert, R. N., Ricciardi, A., Ahmed, D. A., Altermatt, F., Schäfer, R. B., … Briski, E. (2023). The faunal Ponto-Caspianization of central and western European waterways. Biological Invasions, 25(8), 2613-2629. doi:10.1007/s10530-023-03060-0, Institutional Repository
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Strickland, K., Räsänen, K., Kristjánsson, B. K., Phillips, J. S., Einarsson, A., Snorradóttir, R. G., … Jónsson, Z. O. (2023). Genome-phenotype-environment associations identify signatures of selection in a panmictic population of threespine stickleback. Molecular Ecology, 32(7), 1708-1725. doi:10.1111/mec.16845, Institutional Repository
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Tonolla, D. (2023). Mögliche Auswirkungen des Klimawandels. In Erarbeitung und Beurteilung von Schwall-Sunk Massnahmen – Neue Erkenntnisse aus Forschung und Praxis (pp. 98-101). sine loco: eQcharta; ZHAW. , Institutional Repository
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Weitzman, C. L., Kaestli, M., Rose, A., Hudson, C. M., Gibb, K., Brown, G. P., … Christian, K. (2023). Geographic variation in bacterial assemblages on cane toad skin is influenced more by local environments than by evolved changes in host traits. Biology Open, 12(2), bio059641 (8 pp.). doi:10.1242/bio.059641, Institutional Repository
Wilkes, M. A., Carrivick, J. L., Castella, E., Ilg, C., Cauvy-Fraunié, S., Fell, S. C., … Brown, L. E. (2023). Glacier retreat reorganizes river habitats leaving refugia for Alpine invertebrate biodiversity poorly protected. Nature Ecology & Evolution, 7, 841-851. doi:10.1038/s41559-023-02061-5, Institutional Repository
Zhang, H., Mächler, E., Morsdorf, F., Niklaus, P. A., Schaepman, M. E., & Altermatt, F. (2023). A spatial fingerprint of land-water linkage of biodiversity uncovered by remote sensing and environmental DNA. Science of the Total Environment, 867, 161365 (12 pp.). doi:10.1016/j.scitotenv.2022.161365, Institutional Repository
Zhang, Y., Zhang, X., Li, F., & Altermatt, F. (2023). Fishing eDNA in one of the world's largest rivers: a case study of cross-sectional and depth profile sampling in the Yangtze. Environmental Science and Technology, 57(51), 21691-21703. doi:10.1021/acs.est.3c03890, Institutional Repository
Zhang, H., Haltiner, L., Kaeser, S., Dennis, S. R., Rothhaupt, K. O., Kraemer, B. M., & Spaak, P. (2023). Veliger density and environmental conditions control quagga mussel colonization rates in two perialpine lakes. Journal of Great Lakes Research, 49(4), 809-820. doi:10.1016/j.jglr.2023.05.001, Institutional Repository
van Moorsel, S. J., Thébault, E., Radchuk, V., Narwani, A., Montoya, J. M., Dakos, V., … Pennekamp, F. (2023). Predicting effects of multiple interacting global change drivers across trophic levels. Global Change Biology, 29(5), 1223-1238. doi:10.1111/gcb.16548, Institutional Repository

2022

Ahmed, S., Soorae, P. S., Hammadi, E. A., Zaabi, R. A., Saji, A., Khan, S. B., … Dhaheri, S. A. (2022). Does habitat heterogeneity influence taxonomic richness and abundance? A case study from a terrestrial protected area in Abu Dhabi, United Arab Emirates. Saudi Journal of Biological Sciences, 29, 1737-1746. doi:10.1016/j.sjbs.2021.10.056, Institutional Repository
Alther, R. (2022). Amphipodes. In Connaissance de l’environnement: Vol. UW-2220-F. Espèces exotiques en Suisse. Aperçu des espèces exotiques et de leurs conséquences. État 2022 (pp. 29-30). Bern: Office fédéral de l’environnement OFEV. , Institutional Repository
Alther, R. (2022). Amphipods. In Environmental studies: Vol. UW-2220-E. Alien species in Switzerland. An inventory of alien species and their impact. Situation as of 2022 (pp. 29-30). Bern: Federal Office for the Environement FOEN. , Institutional Repository
Alther, R. (2022). Flohkrebse. In Umwelt-Wissen: Vol. UW-2220-D. Gebietsfremde Arten in der Schweiz. Übersicht über die gebietsfremden Arten und ihre Auswirkungen. Stand 2022 (pp. 29-30). Bern: Bundesamt für Umwelt (BAFU). , Institutional Repository
Beck, S. V., Räsänen, K., Kristjánsson, B. K., Skúlason, S., Jónsson, Z. O., Tsinganis, M., & Leblanc, C. A. (2022). Variation in egg size and offspring phenotype among and within seven Arctic charr morphs. Ecology and Evolution, 12(10), e9427 (16 pp.). doi:10.1002/ece3.9427, Institutional Repository
Blackman, R. C., Brantschen, J., Walser, J. C., Wüthrich, R., & Altermatt, F. (2022). Monitoring invasive alien macroinvertebrate species with environmental DNA. River Research and Applications, 38(8), 1400-1412. doi:10.1002/rra.3947, Institutional Repository
Blackman, R. C., Ho, H. C., Walser, J. C., & Altermatt, F. (2022). Spatio-temporal patterns of multi-trophic biodiversity and food-web characteristics uncovered across a river catchment using environmental DNA. Communications Biology, 5, 259 (11 pp.). doi:10.1038/s42003-022-03216-z, Institutional Repository
Borko, Š., Altermatt, F., Zagmajster, M., & Fišer, C. (2022). A hotspot of groundwater amphipod diversity on a crossroad of evolutionary radiations. Diversity and Distributions, 28(12), 2765-2777. doi:10.1111/ddi.13500, Institutional Repository
Borrero-Santiago, A. R., Dellisanti, W., Sánchez-Quinto, A., Moreno-Andrés, J., Nemoy, P., Richa, K., … Mestre, M. (2022). Using Margalef's vision to understand the current aquatic microbial ecology. Scientia Marina, 86(1), e026 (9 pp.). doi:10.3989/scimar.05199.026, Institutional Repository
Brantschen, J., Pellissier, L., Walser, J. C., & Altermatt, F. (2022). Evaluation of primer pairs for eDNA-based assessment of Ephemeroptera, Plecoptera, and Trichoptera across a biogeographically diverse region. Environmental DNA, 4(6), 1356-1368. doi:10.1002/edn3.342, Institutional Repository
Brosse, M., Benateau, S., Gaudard, A., Stamm, C., & Altermatt, F. (2022). The importance of indirect effects of climate change adaptations on alpine and pre‐alpine freshwater systems. Ecological Solutions and Evidence, 3(1), e12127 (8 pp.). doi:10.1002/2688-8319.12127, Institutional Repository
Bruijning, M., Fossen, E. I. F., Jongejans, E., Vanvelk, H., Raeymaekers, J. A. M., Govaert, L., … De Meester, L. (2022). Host–parasite dynamics shaped by temperature and genotype: quantifying the role of underlying vital rates. Functional Ecology, 36, 485-499. doi:10.1111/1365-2435.13966, Institutional Repository
Bryner, A., & Spaak, P. (2022). Hauslabor für die Eawag-Wasserforschung. In F. Gartmann & F. Auderset (Eds.), Neujahrsblatt der Naturforschenden Gesellschaft in Zürich NGZH: Vol. 224. Der Greifensee. Symbiose von Naherholung und Naturschutz? (pp. 44-56). Fällanden: Verband zum Schutz des Greifensees. , Institutional Repository
Carraro, L., & Altermatt, F. (2022). Optimal Channel Networks accurately model ecologically-relevant geomorphological features of branching river networks. Communications Earth & Environment, 3, 125 (10 pp.). doi:10.1038/s43247-022-00454-1, Institutional Repository
Consoli, G., Haller, R. M., Döring, M., Hashemi, S., & Robinson, C. T. (2022). Tributary effects on the ecological responses of a regulated river to experimental floods. Journal of Environmental Management, 303, 114122 (16 pp.). doi:10.1016/j.jenvman.2021.114122, Institutional Repository
Costello, D. M., Tiegs, S. D., Boyero, L., Canhoto, C., Capps, K. A., Danger, M., … Zwart, J. A. (2022). Global patterns and controls of nutrient immobilization on decomposing cellulose in riverine ecosystems. Global Biogeochemical Cycles, 36(3), e2021GB007163 (15 pp.). doi:10.1029/2021GB007163, Institutional Repository
Cote, J., Dahirel, M., Schtickzelle, N., Altermatt, F., Ansart, A., Blanchet, S., … Legrand, D. (2022). Dispersal syndromes in challenging environments: a cross-species experiment. Ecology Letters, 25(12), 2675-2687. doi:10.1111/ele.14124, Institutional Repository
Drost, A. M., Siebers, A. R., Paillex, A., Misteli, B., Peeters, E. T. H. M., & Robinson, C. T. (2022). Long-lasting effects of experimental flow intermittency on alpine stream macroinvertebrates (Val Roseg, Switzerland). Hydrobiologia, 849, 1931-1946. doi:10.1007/s10750-022-04843-7, Institutional Repository
Ehmann, H., Hetzenauer, H., Härtl-Brandl, K., Hutter, G., Kuhn, G., Noffke, A., … Wolf, T. (2022). Limnologischer Zustand des Bodensees. A - aktueller Teil. B - Jahresbericht 2020/2021 (Jahresbericht der internationalen Gewässerschutzkommission für den Bodensee: limnologischer Zustand des Bodensees, Report No.: 44). Augsburg: Internationale Gewässerschutzkommission für den Bodensee (IGKB). , Institutional Repository
Farinha, A. T., di Tria, J., Reyes, M., Rosas, C., Pang, O., Zufferey, R., … Kovac, M. (2022). Off-shore and underwater sampling of aquatic environments with the aerial-aquatic drone MEDUSA. Frontiers in Environmental Science, 10, 1023269 (12 pp.). doi:10.3389/fenvs.2022.1023269, Institutional Repository
Feijen, F., Zajac, N., Vorburger, C., Blasco-Costa, I., & Jokela, J. (2022). Phylogeography and cryptic species structure of a locally adapted parasite in New Zealand. Molecular Ecology, 31(15), 4112-4126. doi:10.1111/mec.16570, Institutional Repository
Fišer, C., Borko, Š., Delić, T., Kos, A., Premate, E., Zagmajster, M., … Altermatt, F. (2022). The European Green Deal misses Europe's subterranean biodiversity hotspots. Nature Ecology & Evolution, 6, 1403-1404. doi:10.1038/s41559-022-01859-z, Institutional Repository
Gallego, I., & Narwani, A. (2022). Ecology and evolution of competitive trait variation in natural phytoplankton communities under selection. Ecology Letters, 25, 2397-2409. doi:10.1111/ele.14103, Institutional Repository
Gebert, F., Obrist, M. K., Siber, R., Altermatt, F., Bollmann, K., & Schuwirth, N. (2022). Recent trends in stream macroinvertebrates: warm-adapted and pesticide-tolerant taxa increase in richness. Biology Letters, 18(3), 20210513 (7 pp.). doi:10.1098/rsbl.2021.0513, Institutional Repository
Gilarranz, L. J., Narwani, A., Odermatt, D., Siber, R., & Dakos, V. (2022). Regime shifts, trends, and variability of lake productivity at a global scale. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(35), e2116413119 (6 pp.). doi:10.1073/pnas.2116413119, Institutional Repository
Govaert, L., Pantel, J. H., & De Meester, L. (2022). Quantifying eco-evolutionary contributions to trait divergence in spatially structured systems. Ecological Monographs, 92(4), e1531 (21 pp.). doi:10.1002/ecm.1531, Institutional Repository
Guntern, J., Altermatt, F., Seehausen, O., Stamm, C., & van der Heijden, M. (2022). Auswirkungen übermässiger Stickstoff- und Phosphoreinträge auf die Biodiversität. Umweltrecht in der Praxis, 36(7), 735-752. , Institutional Repository
Haltiner, L., Zhang, H., Anneville, O., De Ventura, L., DeWeber, J. T., Hesselschwerdt, J., … Dennis, S. R. (2022). The distribution and spread of quagga mussels in perialpine lakes north of the Alps. Aquatic Invasions, 17(2), 153-173. doi:10.3391/ai.2022.17.2.02, Institutional Repository
Hattich, G. S. I., Listmann, L., Govaert, L., Pansch, C., Reusch, T. B. H., & Matthiessen, B. (2022). Experimentally decomposing phytoplankton community change into ecological and evolutionary contributions. Functional Ecology, 36(1), 120-132. doi:10.1111/1365-2435.13923, Institutional Repository
Hauer, F. R., Lorang, M. S., & Gonser, T. (2022). Remote sensing to characterize river floodplain structure and function. Remote Sensing, 14(5), 1132 (22 pp.). doi:10.3390/rs14051132, Institutional Repository
Henry, Y., Brechbühler, E., & Vorburger, C. (2022). Gated communities: inter- and intraspecific diversity of endosymbionts across four sympatric aphid species. Frontiers in Ecology and Evolution, 10, 816184 (7 pp.). doi:10.3389/fevo.2022.816184, Institutional Repository
Ho, H. C., Brodersen, J., Gossner, M. M., Graham, C. H., Kaeser, S., Reji Chacko, M., … Altermatt, F. (2022). Blue and green food webs respond differently to elevation and land use. Nature Communications, 13(1), 6415 (12 pp.). doi:10.1038/s41467-022-34132-9, Institutional Repository
Holenstein, K., Harvey, E., & Altermatt, F. (2022). Patch size distribution affects species invasion dynamics in dendritic networks. Oikos, 2022, e08679 (11 pp.). doi:10.1111/oik.08679, Institutional Repository
Jacquet, C., Carraro, L., & Altermatt, F. (2022). Meta‐ecosystem dynamics drive the spatial distribution of functional groups in river networks. Oikos, 2022(11), e09372 (12 pp.). doi:10.1111/oik.09372, Institutional Repository
Jardim de Queiroz, L., Doenz, C. J., Altermatt, F., Alther, R., Borko, Š., Brodersen, J., … Seehausen, O. (2022). Climate, immigration and speciation shape terrestrial and aquatic biodiversity in the European Alps. Proceedings of the Royal Society B: Biological Sciences, 289(1980), 20221020 (10 pp.). doi:10.1098/rspb.2022.1020, Institutional Repository
Jog, M. G., Sackett, M. E., Kisty, S. D., Hansen, J. A., & Stephenson, J. F. (2022). The behaviour of infected guppies depends on social context, parasite tolerance and host sex. Animal Behaviour, 187, 97-104. doi:10.1016/j.anbehav.2022.03.001, Institutional Repository
Kaech, H., Jud, S., & Vorburger, C. (2022). Similar cost of Hamiltonella defensa in experimental and natural aphid‐endosymbiont associations. Ecology and Evolution, 12(1), e8551 (13 pp.). doi:10.1002/ece3.8551, Institutional Repository
Kahlert, M., Maaria Karjalainen, S., Keck, F., Kelly, M., Ramon, M., Rimet, F., … Zimmermann, J. (2022). Co-occurrence, ecological profiles and geographical distribution based on unique molecular identifiers of the common freshwater diatoms Fragilaria and Ulnaria. Ecological Indicators, 141, 109114 (13 pp.). doi:10.1016/j.ecolind.2022.109114, Institutional Repository
Keck, F., Hürlemann, S., Locher, N., Stamm, C., Deiner, K., & Altermatt, F. (2022). A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers. Metabarcoding and Metagenomics, 6, 117-131. doi:10.3897/mbmg.6.79351, Institutional Repository
Keck, F., Blackman, R. C., Bossart, R., Brantschen, J., Couton, M., Hürlemann, S., … Altermatt, F. (2022). Meta-analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment. Molecular Ecology, 31(6), 1820-1835. doi:10.1111/mec.16364, Institutional Repository
Keck, F., Couton, M., & Altermatt, F. (2022). Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses. Molecular Ecology Resources, 23(4), 742-755. doi:10.1111/1755-0998.13746, Institutional Repository
Kyathanahally, S. P., Hardeman, T., Reyes, M., Merz, E., Bulas, T., Brun, P., … Baity-Jesi, M. (2022). Ensembles of data-efficient vision transformers as a new paradigm for automated classification in ecology. Scientific Reports, 12, 18590 (11 pp.). doi:10.1038/s41598-022-21910-0, Institutional Repository
Leu, M., Bucher, H., Vennemann, T., Bagherpour, B., Ji, C., Brosse, M., & Goudemand, N. (2022). A Unitary Association-based conodont biozonation of the Smithian-Spathian boundary (Early Triassic) and associated biotic crisis from South China. Swiss Journal of Palaeontology, 141(1), 19 (61 pp.). doi:10.1186/s13358-022-00259-x, Institutional Repository
Li, F., Zhang, Y., Altermatt, F., Zhang, X., Cai, Y., & Yang, Z. (2022). Gap analysis for DNA-based biomonitoring of aquatic ecosystems in China. Ecological Indicators, 137, 108732 (11 pp.). doi:10.1016/j.ecolind.2022.108732, Institutional Repository
Llaberia-Robledillo, M., Balbuena, J. A., Sarabeev, V., & Llopis-Belenguer, C. (2022). Changes in native and introduced host–parasite networks. Biological Invasions, 24, 543-555. doi:10.1007/s10530-021-02657-7, Institutional Repository
Luo, M., Wang, S., Saavedra, S., Ebert, D., & Altermatt, F. (2022). Multispecies coexistence in fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(37), e2201503119 (8 pp.). doi:10.1073/pnas.2201503119, Institutional Repository
Mathers, K. L., Robinson, C. T., & Weber, C. (2022). Patchiness in flow refugia use by macroinvertebrates following an artificial flood pulse. River Research and Applications, 38, 696-707. doi:10.1002/rra.3941, Institutional Repository
Mausbach, J., Laurila, A., & Räsänen, K. (2022). Context dependent variation in corticosterone and phenotypic divergence of Rana arvalis populations along an acidification gradient. BMC Ecology and Evolution, 22(1), 11 (19 pp.). doi:10.1186/s12862-022-01967-1, Institutional Repository
Moerman, F., Fronhofer, E. A., Altermatt, F., & Wagner, A. (2022). Selection on growth rate and local adaptation drive genomic adaptation during experimental range expansions in the protist Tetrahymena thermophila. Journal of Animal Ecology, 91(6), 1088-1103. doi:10.1111/1365-2656.13598, Institutional Repository
Moor, H., Bergamini, A., Vorburger, C., Holderegger, R., Bühler, C., Egger, S., & Schmidt, B. R. (2022). Bending the curve: simple but massive conservation action leads to landscape-scale recovery of amphibians. Proceedings of the National Academy of Sciences of the United States of America PNAS, 119(42), e2123070119 (8 pp.). doi:10.1073/pnas.2123070119, Institutional Repository
Moor, H., Gossner, M. M., Graham, C., Hobi, M. L., Logar, I., Narwani, A., … Altermatt, F. (2022). Besserer Biodiversitätsschutz in Blau-Grünen Ökosystemen. Des écosystèmes bleus-verts pour mieux protéger la biodiversité. Nature et Paysage. Natur und Landschaft: Inside (1), 25-29. , Institutional Repository
Moor, H., Gossner, M. M., Graham, C., Hobi, M. L., Logar, I., Matthews, B., … Altermatt, F. (2022). Blau-grüne Biodiversität ist ein wichtiger Teil des Waldes. Wald und Holz, 103(4), 30-33. , Institutional Repository
Moza, M. I., & Postolache, C. (2022). Optimized protocol for cyanobacterial 16s rrna analysis in Danube Delta lakes. Biointerface Research in Applied Chemistry, 12(2), 1365-1384. doi:10.33263/BRIAC122.13651384, Institutional Repository
Narayan, K. S., Vorburger, C., & Hafer‐Hahmann, N. (2022). Bottom‐up effect of host protective symbionts on parasitoid diversity: limited evidence from two field experiments. Journal of Animal Ecology, 91(3), 643-654. doi:10.1111/1365-2656.13650, Institutional Repository
Olive, M., Moerman, F., Fernandez-Cassi, X., Altermatt, F., & Kohn, T. (2022). Removal of waterborne viruses by Tetrahymena pyriformis is virus-specific and coincides with changes in protist swimming speed. Environmental Science and Technology, 56(7), 4062-4070. doi:10.1021/acs.est.1c05518, Institutional Repository
Palamara, G. M., Dennis, S. R., Haenggi, C., Schuwirth, N., & Reichert, P. (2022). Investigating the effect of pesticides on Daphnia population dynamics by inferring structure and parameters of a stochastic model. Ecological Modelling, 472, 110076 (13 pp.). doi:10.1016/j.ecolmodel.2022.110076, Institutional Repository
Parreño, M. A., Petchey, S., Chapman, M., Altermatt, F., Backhaus, N., Deplazes-Zemp, A., … Petchey, O. L. (2022). How puzzles are shaping our understanding of biodiversity. A call for more research into biodiversity representation in educational games. GAIA: Ecological Perspectives for Science and Society, 31(3), 139-145. doi:10.14512/gaia.31.3.3, Institutional Repository
Peszek, Ł., Kawecka, B., & Robinson, C. T. (2022). Long-term response of diatoms in high-elevation streams influenced by rock glaciers. Ecological Indicators, 144, 109515 (12 pp.). doi:10.1016/j.ecolind.2022.109515, Institutional Repository
Pomati, F., Reyes, M., Narwani, A., Fischer, R., & Ptacnik, R. (2022). A diversity of primary producers in lakes. In T. Mehner, K. Tockner, D. Bouffard, M. E. Perga, & L. R. Poff (Eds.), Vol. 2. Encyclopedia of inland waters (pp. 1-13). doi:10.1016/B978-0-12-819166-8.00019-0, Institutional Repository
Puccinelli, E., Zeppilli, D., Stefanoudis, P. V., Wittische-Helou, A., Kermorgant, M., Fuchs, S., … Weber, A. A. T. (2022). Hybrid conferences: opportunities, challenges and ways forward. Frontiers in Marine Science, 9, 902772 (13 pp.). doi:10.3389/fmars.2022.902772, Institutional Repository
Rajarajan, A., Wolinska, J., Walser, J. C., Mäder, M., & Spaak, P. (2022). Infection by a eukaryotic gut parasite in wild Daphnia sp. associates with a distinct bacterial community. FEMS Microbiology Ecology, 98(10), fiac097 (9 pp.). doi:10.1093/femsec/fiac097, Institutional Repository
Robinson, C. T., Jolidon, C., Consoli, G., Bloem, S., & Ebi, C. (2022). Temporal dynamics in the physico-chemistry of a high-alpine stream network in the Swiss National Park. eco.mont, 14(2), 11-23. doi:10.1553/eco.mont-14-2s11, Institutional Repository
Scaramella, N., Mausbach, J., Laurila, A., Stednitz, S., & Räsänen, K. (2022). Short-term responses of Rana arvalis tadpoles to pH and predator stress: adaptive divergence in behavioural and physiological plasticity?. Journal of Comparative Physiology B, 192, 669-682. doi:10.1007/s00360-022-01449-2, Institutional Repository
Sendek, A., Baity-Jesi, M., Altermatt, F., Bader, M. K. F., Liebhold, A. M., Turner, R. M., … Brockerhoff, E. G. (2022). Fewer non-native insects in freshwater than in terrestrial habitats across continents. Diversity and Distributions, 28(11), 2303-2315. doi:10.1111/ddi.13622, Institutional Repository
Seppälä, O., Yohannes, E., & Salo, T. (2022). Condition-dependent immune function in a freshwater snail revealed by stable isotopes. Freshwater Biology, 67(7), 1287-1297. doi:10.1111/fwb.13917, Institutional Repository
Shaw, K., Vogel, M., Andriessen, N., Hardeman, T., Dorea, C. C., & Strande, L. (2022). Towards globally relevant, small-footprint dewatering solutions: Optimal conditioner dose for highly variable blackwater from non-sewered sanitation. Journal of Environmental Management, 321, 115961 (11 pp.). doi:10.1016/j.jenvman.2022.115961, Institutional Repository
Sieber, N., Hartikainen, H., Krieg, R., Zenker, A., & Vorburger, C. (2022). Parasite DNA detection in water samples enhances crayfish plague monitoring in asymptomatic invasive populations. Biological Invasions, 24, 281-297. doi:10.1007/s10530-021-02644-y, Institutional Repository
Siebers, A. R., Paillex, A., & Robinson, C. T. (2022). Seasonal and functional variation in the trophic base of intermittent Alpine streams. Limnology and Oceanography, 67(5), 1098-1110. doi:10.1002/lno.12059, Institutional Repository
Smolander, O. P., Blande, D., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., … Saastamoinen, M. (2022). Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map. GigaScience, 11, giab097 (12 pp.). doi:10.1093/gigascience/giab097, Institutional Repository
Sommerwerk, N., Bloesch, J., Baumgartner, C., Bittl, T., Čerba, D., Csányi, B., … Ungureanu, L. (2022). The Danube River Basin. In K. Tockner, C. Zarfl, & C. T. Robinson (Eds.), Rivers of Europe (pp. 81-180). doi:10.1016/B978-0-08-102612-0.00003-1, Institutional Repository
Stritt, C., Gimmi, E. L., Wyler, M., Bakali, A. H., Skalska, A., Hasterok, R., … Roulin, A. C. (2022). Migration without interbreeding: evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes. Molecular Ecology, 31(1), 70-85. doi:10.1111/mec.16207, Institutional Repository
Studer, A., Knüsel, M., Alther, R., Hürlemann, S., & Altermatt, F. (2022). Erfassung der Grundwasserflohkrebse. Studie zur Artenvielfalt und Verbreitung im Einzugsgebiet der Töss. Aqua & Gas, 102(4), 14-19. , Institutional Repository
Su, E., S. Fischer, R. Demmer-Steingruber, Nigg, S., Güsewell, S., Albrich, W. C., … Kahlert, C. R. (2022). Humoral and cellular responses to mRNA-based COVID-19 booster vaccinations in patients with solid neoplasms under active treatment. ESMO Open, 7(5), 100587 (11 pp.). doi:10.1016/j.esmoop.2022.100587, Institutional Repository
Tamminen, M., Spaak, J., Tlili, A., Eggen, R., Stamm, C., & Räsänen, K. (2022). Wastewater constituents impact biofilm microbial community in receiving streams. Science of the Total Environment, 807(3), 151080 (8 pp.). doi:10.1016/j.scitotenv.2021.151080, Institutional Repository
Tockner, K., Tonolla, D., Bremerich, V., Jähnig, S. C., Robinson, C. T., & Zarfl, C. (2022). Introduction to European rivers. In K. Trockner, C. Zarfl, & C. T. Robinson (Eds.), Rivers of Europe (pp. 1-26). doi:10.1016/B978-0-08-102612-0.00001-8, Institutional Repository
Tomanović, Ž., Kavallieratos, N. G., Ye, Z., Nika, E. P., Petrović, A., Vollhardt, I. M. G., & Vorburger, C. (2022). Cereal aphid parasitoids in Europe (Hymenoptera: Braconidae: Aphidiinae): taxonomy, biodiversity, and ecology. Insects, 13(12), 1142 (25 pp.). doi:10.3390/insects13121142, Institutional Repository
Travers Cook, T. J., Skirgaila, C., Martin, O. Y., & Buser, C. C. (2022). Infection by dsRNA viruses is associated with enhanced sporulation efficiency in Saccharomyces cerevisiae. Ecology and Evolution, 12(1), e8558 (8 pp.). doi:10.1002/ece3.8558, Institutional Repository
Twining, C. W., Weber, C., Kowarik, C., Gossner, M. M., Graham, C. H., Matthews, B., & Shipley, J. R. (2022). Zum Fressen gern: unsere Gewässer aus der Vogelperspektive. Wasser, Energie, Luft, 114(2), 68-74. , Institutional Repository
Udodenko, Y. G., Robinson, C. T., Choijil, J., Badrakh, R., Munkhbat, J., Ivanova, E. S., & Komov, V. T. (2022). Mercury levels in sediment, fish and macroinvertebrates of the Boroo River, northern Mongolia, under the legacy of gold mining. Ecotoxicology, 31, 312-323. doi:10.1007/s10646-021-02502-6, Institutional Repository
Vorburger, C. (2022). Defensive symbionts and the evolution of parasitoid host specialization. Annual Review of Entomology, 67, 329-346. doi:10.1146/annurev-ento-072621-062042, Institutional Repository
Zia, A., Schroth, A. W., Hecht, J. S., Isles, P., Clemins, P. J., Turnbull, S., … Pinder, G. (2022). Climate change-legacy phosphorus synergy hinders lake response to aggressive water policy targets. Earth's Future, 10(5), e2021EF002234 (17 pp.). doi:10.1029/2021EF002234, Institutional Repository
Çetin, C., Furman, A., Kalkan, E., & Bilgin, R. (2022). Mitonuclear genetic patterns of divergence in the marbled crab, Pachygrapsus marmoratus (Fabricius, 1787) along the Turkish seas. PLoS One, 17(4), e0266506 (21 pp.). doi:10.1371/journal.pone.0266506, Institutional Repository
Tockner, K., Zarfl, C., & Robinson, C. T. (Eds.). (2022). Rivers of Europe (2nd ed.). doi:10.1016/B978-0-08-102612-0.01001-4, Institutional Repository

2021

Alberti, M., Palkovacs, E. P., Des Roches, S., De Meester, L., Brans, K. I., Govaert, L., … Verrelli, B. C. (2020). The complexity of urban eco-evolutionary dynamics. BioScience, 70(9), 772-793. doi:10.1093/biosci/biaa079, Institutional Repository
Altermatt, F., Little, C. J., Mächler, E., Wang, S., Zhang, X., & Blackman, R. C. (2020). Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems. Oikos, 129(5), 607-618. doi:10.1111/oik.06806, Institutional Repository
Alther, R., & Weber, R. (2020). "Wir rechnen mit weiteren Entdeckungen". Pro Natura Magazine (1), 7-8. , Institutional Repository
Alther, R., Bongni, N., Borko, Š., Fišer, C., & Altermatt, F. (2020). Reiche Grundwasserfauna. Pilotstudie fördert Artenvielfalt zutage. Aqua & Gas, 100(7/8), 36-42. , Institutional Repository
Archambeault, S. L., Durston, D. J., Wan, A., El‐Sabaawi, R. W., Matthews, B., & Peichel, C. L. (2020). Phosphorus limitation does not drive loss of bony lateral plates in freshwater stickleback (Gasterosteus aculeatus). Evolution, International Journal of Organic Evolution, 74(9), 2088-2104. doi:10.1111/evo.14044, Institutional Repository
Baggio, M., Chavas, J. ‐P., Di Falco, S., Hertig, A., & Pomati, F. (2020). The effect of anthropogenic and environmental factors in coupled human‐natural systems: evidence from Lake Zürich. Natural Resource Modeling, 33, e12245 (28 pp.). doi:10.1111/nrm.12245, Institutional Repository
Beck, S. V., Räsänen, K., Leblanc, C. A., Skúlason, S., Jónsson, Z. O., & Kristjánsson, B. K. (2020). Differences among families in craniofacial shape at early life-stages of Arctic charr (Salvelinus alpinus). BMC Developmental Biology, 20(1), 21 (15 pp.). doi:10.1186/s12861-020-00226-0, Institutional Repository
Bergström, A. K., Jonsson, A., Isles, P. D. F., Creed, I. F., & Lau, D. C. P. (2020). Changes in nutritional quality and nutrient limitation regimes of phytoplankton in response to declining N deposition in mountain lakes. Aquatic Sciences, 82(2), 31 (16 pp.). doi:10.1007/s00027-020-0697-1, Institutional Repository
Bernhard, G. H., Neale, R. E., Barnes, P. W., Neale, P. J., Zepp, R. G., Wilson, S. R., … White, C. C. (2020). Environmental effects of stratospheric ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2019. Photochemical and Photobiological Sciences, 19(5), 542-584. doi:10.1039/d0pp90011g, Institutional Repository
Bernhardt, J. R., O'Connor, M. I., Sunday, J. M., & Gonzalez, A. (2020). Life in fluctuating environments. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1814), 20190454 (22 pp.). doi:10.1098/rstb.2019.0454, Institutional Repository
Bernhardt, J. R., Kratina, P., Pereira, A. L., Tamminen, M., Thomas, M. K., & Narwani, A. (2020). The evolution of competitive ability for essential resources. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1798), 20190247 (10 pp.). doi:10.1098/rstb.2019.0247, Institutional Repository
Blackman, R. C., Bruder, A., Burdon, F. J., Convey, P., Funk, W. C., Jähnig, S. C., … Altermatt, F. (2020). A meeting framework for inclusive and sustainable science. Nature Ecology & Evolution, 4, 668-671. doi:10.1038/s41559-020-1190-x, Institutional Repository
Blackman, R. C., Benucci, M., Donnelly, R. C., Hänfling, B., Harper, L. R., Sellers, G. S., & Lawson Handley, L. (2020). Simple, sensitive and species-specific assays for detecting quagga and zebra mussels (Dreissena rostriformis bugensis and D. polymorpha) using environmental DNA. Management of Biological Invasions, 11(2), 218-236. doi:10.3391/mbi.2020.11.2.04, Institutional Repository
Blackman, R. C., Ling, K. K. S., Harper, L. R., Shum, P., Hänfling, B., & Lawson-Handley, L. (2020). Targeted and passive environmental DNA approaches outperform established methods for detection of quagga mussels, Dreissena rostriformis bugensis in flowing water. Ecology and Evolution, 10(23), 13248-13259. doi:10.1002/ece3.6921, Institutional Repository
Blasco-Costa, I., Seppälä, K., Feijen, F., Zajac, N., Klappert, K., & Jokela, J. (2020). A new species of Atriophallophorus Deblock & Rosé, 1964 (Trematoda: Microphallidae) described from in vitro-grown adults and metacercariae from Potamopyrgus antipodarum (Gray, 1843) (Mollusca: Tateidae). Journal of Helminthology, 94, e108 (15 pp.). doi:10.1017/S0022149X19000993, Institutional Repository
Brans, K. I., Govaert, L., & De Meester, L. (2020). Evolutionary dynamics of metacommunities in urbanized landscapes. In M. Szulkin, J. Munshi-South, & A. Charmantier (Eds.), Urban evolutionary biology (pp. 175-196). doi:10.1093/oso/9780198836841.003.0011, Institutional Repository
Brantschen, J., Gygax, S., Mestrot, A., & Frossard, A. (2020). Soil Hg contamination impact on earthworms' gut microbiome. Applied Sciences, 10(7), 2565 (19 pp.). doi:10.3390/app10072565, Institutional Repository
Burdon, F. J. (2020). Agriculture and mining contamination contribute to a productivity gradient driving cross-ecosystem associations between stream insects and riparian arachnids. In J. M. Kraus, D. M. Walters, & M. A. Mills (Eds.), Contaminants and ecological subsidies. The land-water interface (pp. 61-90). doi:10.1007/978-3-030-49480-3_4, Institutional Repository
Burdon, F. J., McIntosh, A. R., & Harding, J. S. (2020). Mechanisms of trophic niche compression: evidence from landscape disturbance. Journal of Animal Ecology, 89, 730-744. doi:10.1111/1365-2656.13142, Institutional Repository
Burdon, F. J., Bai, Y., Reyes, M., Tamminen, M., Staudacher, P., Mangold, S., … Stamm, C. (2020). Stream microbial communities and ecosystem functioning show complex responses to multiple stressors in wastewater. Global Change Biology, 26(11), 6363-6382. doi:10.1111/gcb.15302, Institutional Repository
Cairns, J., Moerman, F., Fronhofer, E. A., Altermatt, F., & Hiltunen, T. (2020). Evolution in interacting species alters predator life-history traits, behaviour and morphology in experimental microbial communities. Proceedings of the Royal Society B: Biological Sciences, 287(1928), 20200652 (10 pp.). doi:10.1098/rspb.2020.0652, Institutional Repository
Carraro, L., Mächler, E., Wüthrich, R., & Altermatt, F. (2020). Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems. Nature Communications, 11, 3585 (12 pp.). doi:10.1038/s41467-020-17337-8, Institutional Repository
Carraro, L., Bertuzzo, E., Fronhofer, E. A., Furrer, R., Gounand, I., Rinaldo, A., & Altermatt, F. (2020). Generation and application of river network analogues for use in ecology and evolution. Ecology and Evolution, 10(14), 7537-7550. doi:10.1002/ece3.6479, Institutional Repository
Carraro, L., Toffolon, M., Rinaldo, A., & Bertuzzo, E. (2020). SESTET: a spatially‐explicit stream temperature model based on equilibrium temperature. Hydrological Processes, 34, 355-369. doi:10.1002/hyp.13591, Institutional Repository
Chanut, P. C. M., Siebers, A. R., & Robinson, C. T. (2020). Flood disturbance affects macroinvertebrate food chain length in an alluvial river floodplain. Freshwater Biology, 65(3), 490-501. doi:10.1111/fwb.13445, Institutional Repository
Coats, D. W., Choi, J., Jung, J. H., Kim, Y. O., Lu, Y., & Nielsen, L. T. (2020). Mixotrophic scrippsielloid dinoflagellates prey on tintinnid ciliates. Aquatic Ecosystem Health and Management, 23(1), 69-78. doi:10.1080/14634988.2020.1727275, Institutional Repository
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